Atur049884.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:1386884-1401027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.73 82 5.6 1.0 2 23 465 486 464 486 0.95 2 12 0.0045 0.51 12.5 5.1 2 23 494 515 494 515 0.97 3 12 4.6 5.2e+02 3.1 0.4 1 19 519 537 519 541 0.84 4 12 8.4e-06 0.00095 21.1 2.8 1 23 546 569 546 569 0.98 5 12 0.0031 0.35 13.1 0.1 3 23 579 600 578 600 0.95 6 12 0.66 74 5.7 0.1 2 20 609 627 608 628 0.93 7 12 0.0074 0.84 11.9 0.1 2 23 637 659 637 659 0.95 8 12 2.5e-06 0.00028 22.8 0.4 1 23 664 687 664 687 0.95 9 12 1.8e-05 0.0021 20.1 0.2 3 23 716 736 715 736 0.98 10 12 8e-05 0.009 18.0 0.1 1 23 742 764 742 764 0.94 11 12 0.064 7.2 8.9 1.5 2 23 771 792 770 792 0.96 12 12 1.5e-05 0.0017 20.3 1.3 1 23 798 821 798 821 0.95
Sequence Information
- Coding Sequence
- ATGAATAACGACAACTACAAGAAATGGCTGGTTAATCAATTAATTCCAAATATACCCAGTGATTCTGTTTTGGTTATCGACAATGCACCCTATCACAATAAATATGTTGAAAGACCCCCCAACTCAAACACCAATAAACCGGAAATGATCAACTGGTTACAAAGACACGAAATTCCAGTTGATCATAAATTTACAAAACCCCAGATATATGATATTATATGTCAGCACAAGGAGAGATTTACAGAGTTTTCCGTGGACAAGATACTAGCCGAACATGGGCACACTGTGTTGCGATTGCTACCATACCATCCGGATTTTAATTCAATTGAAAATATATGGTCTCAACTGAAAGGCTCTGTAGCTGCGAGAAACGTGGATATGAATTtaacttcaataaaaaaattattagctGAAAAAGTAAACATGATCGGGGCTGATGAGTGGAAAAAGGTTTGCGATCATGCGGTCAAATGCGAGAATGAATATCGAGGAATTCAACACGCTATGGACGACAAAATAGATAGATTAGATAGACTAGTAATAAATACAGCTGATAGTGACACCGGACCCCGTGCTCTCATTGggTTTGCAGTGTGGGACGGGCTCCCCCAGCACCTGTGCGCCTACTGCCGCGCGCTGCTGCGCAAGAGCTCGGGGCTCCGGGAGCGCTCCCAGCGCGCCCAGGAGATCCTCAAGCAGAGCCTCATCTATCAGCATTATTTAACAACGGACCTGATACGTACTATAGACAGAATATCCAACCGGTTGTCCTTTCGCCTCTCCACGGAACAACTAGACCAGCCAGAACCAGCACAACAAGACAATCTTAATGACGACAATGTTCACGAAAATGATGTCAATGGTCACGTTAATGTCGACAATGTTCACGATGATGATAACAATGACGATACAGTGCCTGTAGATGAGCTTGAACATGATCCGGTAGACAATAATGATGGAAACGAAAATGACGATACGACTGTTGAGAATAATGAATTGTCAACTGATAATGACGTTCGAGTGAAAGAAGAGGAACCGCAGCCTGAAGTAGTGGCTGAAATGATTGAAATAGAAATTGAATTGCCTAAAAAAGTATTACGGAAACGAAAAGTAGTGAAAAATGTTAAGAGTGTTAGAAAAGTTAAAAAAGATGTTAAGAATGTTAAAGTGCCAAAGGTAGTCAAGAACATTAAAGAGAGAGGAGATAAAACCGAAGAATCGAAGAATTataaaagaaagaagaaagggTTTAAGAGGTTCTTCAGTTGTGAAGAGGATTACATTAAGTTTGAGAATAATTATAACATCAGTATAGAaaagatcagTGAAGAGGAACAGCGCAAAGATATGGAAGCGCGCAAGCTGTCGGCGAACTATGCGCGCGCGCACCTGCGCTGCGAGAAGTGCTTCAAGGGATTCCTGTCCGAGGCCACCTTCGACAACCACCGGAAGGTCCACgacccgATAATGGGCGCGAACGAATGCCATCTCTGTTTCGCTCGTTTCAAGCACCCGACGCGGTTACGTCGGCACATGGAGACACACACACTCAAGTTCATCTGTAAACTTTGTCCGCTGGTCACACGCCATCGAGGCATGGCCATGATGCATTCCGACTTCCACTCGGGCAAGACGTTTGAGTGCAAATACTGCGGCCTCACGTTCAAGAAAAAGACCACGTTCAACACGCACATACGCGTGCAGCACCCGCTGGAGAACGCGTCGGGGGGAGCCTGTGACGTTTGCGGGGAGACCTTCATTGGGAAACGAGGGCTGCAGCAGCACAAGACCATGGCGCATAAAAAGCTGCCAATACCAGAATTAAAGTGCTCTCAGTGCAACGTGCAGTTCGAGAGCCTGGACGCAGTCGTGAGACACACGGACGGCGGCTGCGACCCCGCACTCAGATCGTGTCCCCAGTGCGGTGATAGGTTCCAGAATTCGGAGCAGCTGGAGTCGCACGTGCTGAGCGCTCACGCCAAGCAGTTCTACAAGTGTGACGATTGCGACAAATCGTTCGCCACCAAGTCGTCCCTGGGCACGCACGTGGACCGCGTGCATCTCAAGATCAAGCCGAAGAAGACCGGCTTCTACAAACACAACATGTACCCCAAGAAGATGCAGATCAAACGGGTTGAAGAAATTTGTGAGATCTGCGGGAAGGGATATCCGAGTTCGACCTGGCTGAAGTACCACCAGCGCACGCACACGGGCGAGCGGCCGTACAAGTGTCCCGAGTGTCCCAAGAGCTACATGACGCCGGCCGCCTTGCAGAGTCACTCTGTGTCGCACACGGGCGAGCGGCGCTGGCAGTGCGCGCAGTGTCCCAAGACCTTCctgcaccagtcctccatctacaaacacaagctgGTCCACACAGGGGAGAAGCCGTTCGCCTGCCACATCTGCAGCAAAACGTTCACGCAGTCCGGCTCGCTCGCCACTCACGTCAAGTACGTGCATCTCAAGATAaagccgccgccgcgccgccgcaaCCGGAACCATCCCTCTAGCTTGGGGGCGTAA
- Protein Sequence
- MNNDNYKKWLVNQLIPNIPSDSVLVIDNAPYHNKYVERPPNSNTNKPEMINWLQRHEIPVDHKFTKPQIYDIICQHKERFTEFSVDKILAEHGHTVLRLLPYHPDFNSIENIWSQLKGSVAARNVDMNLTSIKKLLAEKVNMIGADEWKKVCDHAVKCENEYRGIQHAMDDKIDRLDRLVINTADSDTGPRALIGFAVWDGLPQHLCAYCRALLRKSSGLRERSQRAQEILKQSLIYQHYLTTDLIRTIDRISNRLSFRLSTEQLDQPEPAQQDNLNDDNVHENDVNGHVNVDNVHDDDNNDDTVPVDELEHDPVDNNDGNENDDTTVENNELSTDNDVRVKEEEPQPEVVAEMIEIEIELPKKVLRKRKVVKNVKSVRKVKKDVKNVKVPKVVKNIKERGDKTEESKNYKRKKKGFKRFFSCEEDYIKFENNYNISIEKISEEEQRKDMEARKLSANYARAHLRCEKCFKGFLSEATFDNHRKVHDPIMGANECHLCFARFKHPTRLRRHMETHTLKFICKLCPLVTRHRGMAMMHSDFHSGKTFECKYCGLTFKKKTTFNTHIRVQHPLENASGGACDVCGETFIGKRGLQQHKTMAHKKLPIPELKCSQCNVQFESLDAVVRHTDGGCDPALRSCPQCGDRFQNSEQLESHVLSAHAKQFYKCDDCDKSFATKSSLGTHVDRVHLKIKPKKTGFYKHNMYPKKMQIKRVEEICEICGKGYPSSTWLKYHQRTHTGERPYKCPECPKSYMTPAALQSHSVSHTGERRWQCAQCPKTFLHQSSIYKHKLVHTGEKPFACHICSKTFTQSGSLATHVKYVHLKIKPPPRRRNRNHPSSLGA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -