Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990303.1:10541571-10546692[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00028 0.032 16.3 1.5 2 23 13 35 12 35 0.92

2 16 6e-05 0.0068 18.4 3.0 1 23 40 63 40 63 0.95

3 16 0.13 14 8.0 4.5 1 23 142 165 142 165 0.94

4 16 0.15 16 7.8 0.3 2 23 193 215 192 215 0.95

5 16 0.049 5.5 9.3 0.1 3 23 239 260 237 260 0.95

6 16 0.14 16 7.9 0.1 3 23 267 288 265 288 0.93

7 16 0.014 1.6 11.0 0.6 1 23 293 316 293 316 0.96

8 16 0.011 1.3 11.3 0.4 2 23 322 344 321 344 0.93

9 16 0.00012 0.013 17.5 4.8 1 23 348 371 348 371 0.97

10 16 6e-05 0.0068 18.4 1.9 1 23 422 444 422 444 0.98

11 16 0.42 47 6.3 0.4 2 23 502 524 502 524 0.91

12 16 0.23 25 7.2 0.1 3 13 531 541 529 545 0.84

13 16 0.0038 0.43 12.8 1.2 1 23 553 576 553 576 0.95

14 16 0.0003 0.034 16.2 3.6 1 23 580 603 580 603 0.97

15 16 0.0027 0.3 13.2 0.7 2 23 610 631 609 631 0.96

16 16 0.018 2 10.7 2.2 1 23 637 659 637 659 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00028	0.032	16.3	1.5	2	23	13	35	12	35	0.92
2	16	6e-05	0.0068	18.4	3.0	1	23	40	63	40	63	0.95
3	16	0.13	14	8.0	4.5	1	23	142	165	142	165	0.94
4	16	0.15	16	7.8	0.3	2	23	193	215	192	215	0.95
5	16	0.049	5.5	9.3	0.1	3	23	239	260	237	260	0.95
6	16	0.14	16	7.9	0.1	3	23	267	288	265	288	0.93
7	16	0.014	1.6	11.0	0.6	1	23	293	316	293	316	0.96
8	16	0.011	1.3	11.3	0.4	2	23	322	344	321	344	0.93
9	16	0.00012	0.013	17.5	4.8	1	23	348	371	348	371	0.97
10	16	6e-05	0.0068	18.4	1.9	1	23	422	444	422	444	0.98
11	16	0.42	47	6.3	0.4	2	23	502	524	502	524	0.91
12	16	0.23	25	7.2	0.1	3	13	531	541	529	545	0.84
13	16	0.0038	0.43	12.8	1.2	1	23	553	576	553	576	0.95
14	16	0.0003	0.034	16.2	3.6	1	23	580	603	580	603	0.97
15	16	0.0027	0.3	13.2	0.7	2	23	610	631	609	631	0.96
16	16	0.018	2	10.7	2.2	1	23	637	659	637	659	0.97

Sequence Information

Coding Sequence: ATGCATGTGAGGAAGATCCACATGGAAAAGCTCTTGCCTTGCGATCAATGCGATAGGAGCTTTAATAAGAAGTCTGAATTGATGGCTCACTGCCGGATTTACCATCGACGAGCAGGTTACCAGTGCGTTAAATGCGAACGTTGCTTCCGCACCTCTAGCTTGCTGAGGCTCCACCTCATTAACACTCACGGCTCTTCAGAACGCAAATGCACGAGAATTCTCTCTGGTTTAAGAGCTAGAAGCACCCGCTATCTCAGAATTGGCACCGGGGACACAGAACTCGAGGATTTGGATGATTGTGAAATAGAAACACAACGGAGGAAACTCCGAGAAAGAAACGCTATAGCCAAGAAGAATCGCGAGAACATTGCTTGTATTCTTAACATGACGACAGCGATACCTTTCAAATATTATCAGAACAGATTCACCTGTTTCCATTGTTCGAAAGACTTCAATGAACACGAGGACATGCGAACACATACTTTATTGGAGCATCCATTTTATGATTTGGAGAGGAAATGTCCTAAATCGCTCAAAGGTGTAAACTTATGTATCAAAATCGACATATCATCGCTGTCTTGTAGGATTTGCTTCGAACCATTCCACGATTTTGACTTACTGGTCGACCATTTGATCATGAATCATAAAGCTAATTACGATAAGAATCTCACAGGGATTATGCAGCCGTTTAAGCTCGAAAAATACAACATGGCGTGTCCTCTTTGCCCGCAAGCATTTTCTTATTTCAACATTCTTCTTAAGCATATGAATCAAGAGCATTCCCCAAAAACTCATCTCTGTTCAAACTGCGGTGCAGTGTTCGCTAGTGAAGCAATTCTAACTATGCATATAGCACGGATCCACGGTCCTAAAGTATTCAAGTGTTCCGATTGTAACATAGAATTGAGTTCAGCTTTGAAATTAAAGAGTCACCGAGCGAAAACTCATGGTGTTCGAGAGGTGCCGTGTCAGAAGTGTTCAGAGAAATTCTCATCCGAATATGAGCGGCAGAAACATTTAATTCAAGTCCACGACATAGGCCACAAGTGTTCTTTTTGTGGCAAGATGTTTGTCAAAAATTCTTTCATGCGAAATCATATACGAAGGACACACATGGAGGAGAAAAACGTGCAATGTACCGTTTATTCAAATCCTGATCAACCAGTACTAAAGGCTTTCGAGAAAGCCACGCGCCACCGCCGCGATAATCTCAGACTGCTGTTGAACAACACGACAGTCATTCCATTCGTGTGGAGAAGCGTGTTCACTTGCTTCTATTGCTCTAAGAACTTCATAGAAAGTGCTGAACTCAGAAAACACACTATGACCCACGCAGAGTGCTCGAAGAACGATAGACGCTTCAGCAAGTTGAATAATTTCTATAATGTGTTGAAAGTTGATGTTTCGAAAATTATAGACCATCTGGTGCCGAAACAAGTAGCGAAATGCGCTGAAGAATACCTCAGTCATATTCAGCCTTTCAAAATAACGCGGGGACGCGCGGAGTGTCTCAAGTGTAAGGAGAACTTTCCAGAATTTAGGGAATTAGTCAAACACACTGACAATGTTCATTCGGGGGAAGAACACTTATGCAATTATTGCGGTGAAGTGTTCAACACTATGGGGCACAGAGCTAACGCTCATGGAACAAAGACGTTCAAATGTTCCAAATGCAATGAGAAATTCGCCACCGTGTATCTCAGGCAGAAGCATCTCATGGATATTCACGAATCgggtcataagtgcactttcTGCGACAGGCTGTTCGCTAGGAACTCATACATGAAGGACCATATCAGGAGGTTACATTTGAAGGAGAAGAATGTGGAATGCTCAGTGTGTAAAGAAAAGTTCTTTGATAAGACTAGACTGAACATCCACATGGTGAAACATATCGGGGAGAGGAACTATCACTGTGATCTTTGCGGGAAAACTTTTCTTTGGAAGAAAAATTTAAGAGGCCACATGTCTTCGCATAAACGAACCGCTTAG
Protein Sequence: MHVRKIHMEKLLPCDQCDRSFNKKSELMAHCRIYHRRAGYQCVKCERCFRTSSLLRLHLINTHGSSERKCTRILSGLRARSTRYLRIGTGDTELEDLDDCEIETQRRKLRERNAIAKKNRENIACILNMTTAIPFKYYQNRFTCFHCSKDFNEHEDMRTHTLLEHPFYDLERKCPKSLKGVNLCIKIDISSLSCRICFEPFHDFDLLVDHLIMNHKANYDKNLTGIMQPFKLEKYNMACPLCPQAFSYFNILLKHMNQEHSPKTHLCSNCGAVFASEAILTMHIARIHGPKVFKCSDCNIELSSALKLKSHRAKTHGVREVPCQKCSEKFSSEYERQKHLIQVHDIGHKCSFCGKMFVKNSFMRNHIRRTHMEEKNVQCTVYSNPDQPVLKAFEKATRHRRDNLRLLLNNTTVIPFVWRSVFTCFYCSKNFIESAELRKHTMTHAECSKNDRRFSKLNNFYNVLKVDVSKIIDHLVPKQVAKCAEEYLSHIQPFKITRGRAECLKCKENFPEFRELVKHTDNVHSGEEHLCNYCGEVFNTMGHRANAHGTKTFKCSKCNEKFATVYLRQKHLMDIHESGHKCTFCDRLFARNSYMKDHIRRLHLKEKNVECSVCKEKFFDKTRLNIHMVKHIGERNYHCDLCGKTFLWKKNLRGHMSSHKRTA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -