Atur049814.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- Znf800
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:949252-952920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.082 9.3 8.6 0.5 3 23 20 41 18 41 0.96 2 13 0.0011 0.13 14.4 3.9 1 23 47 70 47 70 0.97 3 13 0.0037 0.41 12.8 1.2 2 23 86 107 85 108 0.93 4 13 0.00015 0.017 17.2 0.2 3 23 117 138 116 138 0.97 5 13 2.9e-06 0.00033 22.6 1.7 2 23 144 166 144 166 0.97 6 13 0.032 3.6 9.9 6.5 2 23 174 196 173 196 0.97 7 13 3.3e-05 0.0037 19.3 1.0 1 23 207 229 207 229 0.97 8 13 0.00019 0.021 16.9 0.5 2 23 236 258 235 258 0.93 9 13 0.041 4.7 9.5 1.5 1 23 290 312 290 312 0.97 10 13 0.00032 0.037 16.1 4.0 1 23 318 341 318 341 0.97 11 13 6.6e-05 0.0074 18.3 1.0 3 23 362 382 360 382 0.96 12 13 0.00022 0.025 16.7 1.4 1 23 388 411 388 411 0.97 13 13 0.06 6.8 9.0 0.5 2 19 1189 1206 1188 1209 0.93
Sequence Information
- Coding Sequence
- ATGTTACTTCAAACACATATTCAACTAGCTCTACCGCAAGAAGGCTTGACATATGGTTGTCCAAAATGCGGCCAACAGCTGACATCCTTCGCTCGCTTCAAGAAACACCTGGACACCGTTCACACAAAGCCTCTGGAATACAAATGCAAATCCTGTTACAGAGTCTACAAAACTTCTAAGAGCTTAATGAGACATGAGAGGAACCGTCACATGCCGAAAAAAGTTGTAACCAAACCACCCGCGATAAAAGACTTACCATGTTCCATATGTAAAATCAAATTCAGTACAAATACAGCACTGTTCTGGCACAACGAGAGACATCACACTACTAACTCGAAAGATAATATTTGTCCAATTTGCAGGAAACAATTTAGTGACGATGCAACTCTGAAAAGGCATCTAGAAACGGTGCACTCATTTGAGTCTGCCAAGTGTACGGTGTGctcgaaaatatttaaaagccgAGAGAACTTACAGCGGCACATGAACGTCACTCATCCACCACAGGAAGCGGCCAAGACTTGTGATATATGCAAGAAAACATTTAAATGCTCGATACATTTGCGGATGCATACAAGAACTGTACATGCAGCAGCTTTAacagaaaatatattattattcgcCTGCGATGTTTGTAATAAACAATTTCCAAATAAAATGTACTTGTGGAAACACAGGCAAACTCATACCGATGTAAAAGAGGTTCCATGTGAGATCTGTGAGAAGATGTTTAAATCTGCTGATCATGTGAGGAGACATTTGACGCAAGTCCATATGAAGCCACTTAAAATAGAGGATCCCGATGCCTCAAAGAAGGCCCAAAAAGGGAGAGGTAAAGCAAAGAACCCCCGTCCGAAACCGAGCTCATATATATGTGATATTTGCGACAAGGAGTTTGCATGCTGGAGATATATGAAATTACACAAAGAAACTCATGTGGAAAGTAAGCAGTATCCGTGCGGGTTCTGTCATAAAATATTCAGAACCCCGAGCCATGCCACAAGGCATACAAAACGGGTGCACTGGTATCAAAAGGCGCCCGTAACTAAAGAAACAGAATTAACAGATGGTGGTTACGTCAACTGCGATATTTGTAAGAAAGAATTCACTGCTAAGAGTCATCTCGTGAAGCATATAAGCATTCATACGGATGTTCGGCTATTTTCTTgtaaattttgcaataaatcgTACGGACGCGTTAATGATCTTACTGAACATATGAAACGTGTACATAATAGGGCTTCAGGAGAAATAGAAAAGACTAAAGTTCGCAAAAGAACAAATTATATAGAGGAAGCTTTCAAACTAGCGGAATACACAGAAGGCCTGGCAAATACAGAGTACAATTTGGAAGCCGTCAATAATACAGCATTGGAAGCGCTTCAAAACACACAACTTGTAAATAATGAGTATACTTTGGAAAATCTCCAAAATACAGACTACGCATTACATACCTTTGAAAACACTGCTGCGTTTACTGTACAGTCTCTCGTACTCACAGATAAGGATCTTGGCGATACAAGATACATATTGAAAACTGTTAGTACAGAAGAGGCTCTTGGAAATACAGTTGCCCTTAACAATGAAGATTACACATTACAGACCCATGGGACTACTGAGGAGGCTAATAATACAGGCTATTCTTTGAAACCCCTGGGAACTATAAACGTCCTTAATAACACAGAGTATACATTGGAAACCGTTGGAACTGCCGAGACCCTTACAGTTAATAATTCAGGGTACACACTAGAGGATCTTGGAAACGTAGAGACCCTTAAAAATACAGACTACACACTCGAGCCTCTTGGAACCAGAGATACGGAGACCCTAGTGAATACAGGTTATGCACTGAAAACTCTTGAAAACACAGACTTCACATTGAAACCCCTTGAAAGCACAGAGTATACAGAGGTTCTTGAAAGCATAGAAAACACCCTTGAAAACATGGATTTCTCAATAGACGACCTTGAAAATACAGCCCCTCTGCAGTCTAATGCAGTAAATGTAAATACTGAATCATTACAGAATATAGAATATACACAAACTCTGGGAAGCAATGAGTATGAAGTAAAAGCACTTGTAAATACAAACTTACAAAGTGCCCTTGAAAATACAGAGCTTACAGAAAATTCCCTTGAAAATACAGAAATCACAGAAAATGCTCTTGTAAGTACACAGTTCTCAGATTACACAGATAATGTAATTGAAAATACAGATTTTACGGGTAATGATCTCGGGAATACAAGGTTCTCAGATATATCTCTTGATAGTACAGAGTTTTCAGATAACACTCAAGGGAATACAGAGTTTGACAAGGGCGTTGAAAATAGAGCGTTTACAGATAACGATCTTGGAAATACAAGATTCTCAGATATATCCCTTGAAAGCACTGAATTCTCAAAGAAAACCTCTGGAAATACAGAGTTAGACAAGGCCGTTGAAAATAGAGCGTTCAGATATAACGATCTTGAGAATACAAGGTTCTCAGATATATCCCTTGAAAACACAGAATTATCAGACAATACTCTTCGTAATATAGAGTTAGACAATGCCGATGAAAATAGAGAGTTTACAAATAAAGATCTTGAAGATACACAGTTCTCCGAAATTTCCCTTGAAAACACAGATTTCCCAAACAGTTCCCTCGAAAATACAGAATTCACGGATAATGCTGTATCAAATACAGAGTTAGAAAATGCCATTGGAAGTGAAGAGTTAACAGACAGCAGTCTGGGAAATACAGAATTTATAGACAATGACCTTGGAAGTACACGGTTCTCAGATATTTCCCTTGAAAATACAGAATTCACAGATAATGTTCTTGAGACTACCGATTTCATGGATAATAATGTTCTTGCAAATTCTGACTTAGACAATGCTCTTCAAAATTCAGACGTGGAGAATGCGCTTCGAAACACAGAATTCACAAACAATGGTGTCCTTGAAAGTTCGGTTTTAGACAGTGCATTTGAAAATAAAGTCTCAGATAATGCTCTTGGAAATTCAGATTTAGACAATGCCCTAGAAAATACAGAAAATAGTCTTGAGAATACAGAATATATTATAGACAATGACTCTCTTGGAAATACAGACTTAGACGATGCTCTTGACACTACAATGTTTCCCGATAATCTTCTTGGAAATCCAGAGTTCGAAAATACCTTTAAAAGTGCAGATTTCACAAACAATAATGTCTTTGAAAATACAGACTTAGAGAATGCTCTCGGAAATATGGAGTTCACAAATGGACTGAGGAACACAGAACTAGAATCGACTGAAAATATCCCTAAAAACACAGAAAACGCACTCGAGAATACAGGACTCACAGATTTCACAATGTCCCTCGAGAGTACAGAATTCAcagaaaataatgttattaatacAGAAAACACACAGCTACTTGAAAAAGGGCTTGAGAATACAGGGCTTACATTGGACCTAGGAAATGATTTCACAATGGATGACCTTGGGAGTGACTTCAACGATGACGCCCTCGGTATGACAGCGTACACAGTAGACTTTGGGATTACTGAGTACGCACCTCCAAGCAATATAGAGTTGATGACGTGTTTCAAATGTGGCCGGAGCTTCGGGAGAGATGCGGATTTGCATTCACATTCATTGAACTGTGGGGAGGTGATGTTATTTGTTAACTTTCAAGATATGTAG
- Protein Sequence
- MLLQTHIQLALPQEGLTYGCPKCGQQLTSFARFKKHLDTVHTKPLEYKCKSCYRVYKTSKSLMRHERNRHMPKKVVTKPPAIKDLPCSICKIKFSTNTALFWHNERHHTTNSKDNICPICRKQFSDDATLKRHLETVHSFESAKCTVCSKIFKSRENLQRHMNVTHPPQEAAKTCDICKKTFKCSIHLRMHTRTVHAAALTENILLFACDVCNKQFPNKMYLWKHRQTHTDVKEVPCEICEKMFKSADHVRRHLTQVHMKPLKIEDPDASKKAQKGRGKAKNPRPKPSSYICDICDKEFACWRYMKLHKETHVESKQYPCGFCHKIFRTPSHATRHTKRVHWYQKAPVTKETELTDGGYVNCDICKKEFTAKSHLVKHISIHTDVRLFSCKFCNKSYGRVNDLTEHMKRVHNRASGEIEKTKVRKRTNYIEEAFKLAEYTEGLANTEYNLEAVNNTALEALQNTQLVNNEYTLENLQNTDYALHTFENTAAFTVQSLVLTDKDLGDTRYILKTVSTEEALGNTVALNNEDYTLQTHGTTEEANNTGYSLKPLGTINVLNNTEYTLETVGTAETLTVNNSGYTLEDLGNVETLKNTDYTLEPLGTRDTETLVNTGYALKTLENTDFTLKPLESTEYTEVLESIENTLENMDFSIDDLENTAPLQSNAVNVNTESLQNIEYTQTLGSNEYEVKALVNTNLQSALENTELTENSLENTEITENALVSTQFSDYTDNVIENTDFTGNDLGNTRFSDISLDSTEFSDNTQGNTEFDKGVENRAFTDNDLGNTRFSDISLESTEFSKKTSGNTELDKAVENRAFRYNDLENTRFSDISLENTELSDNTLRNIELDNADENREFTNKDLEDTQFSEISLENTDFPNSSLENTEFTDNAVSNTELENAIGSEELTDSSLGNTEFIDNDLGSTRFSDISLENTEFTDNVLETTDFMDNNVLANSDLDNALQNSDVENALRNTEFTNNGVLESSVLDSAFENKVSDNALGNSDLDNALENTENSLENTEYIIDNDSLGNTDLDDALDTTMFPDNLLGNPEFENTFKSADFTNNNVFENTDLENALGNMEFTNGLRNTELESTENIPKNTENALENTGLTDFTMSLESTEFTENNVINTENTQLLEKGLENTGLTLDLGNDFTMDDLGSDFNDDALGMTAYTVDFGITEYAPPSNIELMTCFKCGRSFGRDADLHSHSLNCGEVMLFVNFQDM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -