Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990295.1:19949438-19955878[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00021 0.024 16.7 4.6 1 23 131 153 131 153 0.99

2 13 0.00037 0.042 16.0 4.5 1 23 158 180 158 180 0.98

3 13 5.7 6.4e+02 2.8 0.7 1 23 181 203 181 203 0.86

4 13 0.00013 0.015 17.3 2.3 1 23 217 239 217 239 0.99

5 13 4.9e-05 0.0056 18.7 0.6 1 23 250 272 250 272 0.98

6 13 0.00055 0.062 15.4 3.4 1 23 278 300 278 300 0.95

7 13 1.8e-05 0.002 20.1 3.9 3 23 308 328 307 328 0.98

8 13 8.2e-07 9.3e-05 24.3 0.6 1 23 334 356 334 356 0.96

9 13 0.0043 0.48 12.6 3.8 1 23 362 384 362 384 0.95

10 13 4.6e-06 0.00051 22.0 0.3 1 23 390 412 390 412 0.98

11 13 0.021 2.3 10.4 5.4 1 23 418 440 418 440 0.97

12 13 2.3e-07 2.7e-05 26.0 1.8 1 23 446 468 446 468 0.99

13 13 0.001 0.12 14.6 0.8 1 20 474 493 474 496 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00021	0.024	16.7	4.6	1	23	131	153	131	153	0.99
2	13	0.00037	0.042	16.0	4.5	1	23	158	180	158	180	0.98
3	13	5.7	6.4e+02	2.8	0.7	1	23	181	203	181	203	0.86
4	13	0.00013	0.015	17.3	2.3	1	23	217	239	217	239	0.99
5	13	4.9e-05	0.0056	18.7	0.6	1	23	250	272	250	272	0.98
6	13	0.00055	0.062	15.4	3.4	1	23	278	300	278	300	0.95
7	13	1.8e-05	0.002	20.1	3.9	3	23	308	328	307	328	0.98
8	13	8.2e-07	9.3e-05	24.3	0.6	1	23	334	356	334	356	0.96
9	13	0.0043	0.48	12.6	3.8	1	23	362	384	362	384	0.95
10	13	4.6e-06	0.00051	22.0	0.3	1	23	390	412	390	412	0.98
11	13	0.021	2.3	10.4	5.4	1	23	418	440	418	440	0.97
12	13	2.3e-07	2.7e-05	26.0	1.8	1	23	446	468	446	468	0.99
13	13	0.001	0.12	14.6	0.8	1	20	474	493	474	496	0.93

Sequence Information

Coding Sequence: ATGCATAATGTAGAGAATTGTTGTCGTACGTGTACGAAAAAGTGTGAAGTATTAGTGGATCTCCATGAGCCATGGAAGACGGAAAATGAGAAATGTATTCCACTTTTAGAGATTTTGGAAGCATGCACCGCAGTACAGgTGTCCAAAGAAGATGGATTTCCTCAAAAATTATGCGAAAAATGCGCAAAAGCCCTACAATTTATATACGAGTTCCGAATACAAGCGCTCAATTCTTATGAGGAGTTGAAGAAAATTATTGAAGCACagtcaaatattaaaaatgaacAGATTGAAGTAGAACTTAAGACGGAAAACCAATTTGACTATGATTTTTGTTATGATGATTTCCTACTTGACGATTTCACTAAACATGAGCCGGAAGAGAAAGGATATGTGTGCAATGAATGTAACAAGCATTACACAAATGAGAAAAAGTTTTTGAACCATCTAAAAACACATGATTCACCAAATTTTCGTTGTACAGTTTGTAGTAAAAAATTTCACAAGCAATCCAGCCTTGACCGCCACTTGGCAAAGCACTTCAAATGCATTGTTTGCCTCGACCACTTTGAATCAGAAACGGCACTATTAGAACATATGAATCAGCATGCCTGTGTTGAAATTAAGACTGAACCGGAGGACACTCTTTACAAGTGCTCCGAATGTGATGTAGCATATACAAAGCATAGATCTTTAGCTATGCATATGAAGAAACATAGGAAAGAGGATGGGAACGGCAAGAAGAAGTACAGCTGTGACGTCTGTGAGAAGGAGTATGGTCTAAAGTCGTTGTTGCGTCGGCATATGAAGCTGCATAGCGATGAGAGACCGTACTTGTGCGTGCGGTGTAACAAGAGTTACTCCAGACATGACCAGTATATGGAGCATATGAACAGGCATAACGGGATCAAACCTAATATTTGTCCACATTGTAGCAAGGCATTCACCCAGCTGTGCAGCCTGAAGGACCATATCCGCACCCACACAGGTGAGACCCCGTACCTGTGCTCGGAGTGCGGGAAGGGCTTTAATAACGGCTCCAACCTGCGTCAGCATATGATGAGACACACCGGCTTGAAACCGTTTGCTTGCCACTTGTGTCCAAAGCGGTTCTCTACTAAAGGTCAAATGACATGCCACATCGGAACGCACACGGGCGTCCATCCCTACAAATGCGACGAGTGTGGCGCCGCCTTCACCAAGCCCAACTCGCTGAAGAAGCACAAGCTCATCCACCTGGGCATCAAGCCCTTCGCCTGCGACACCTGCGCCATGCGTTTCTCCTGCAAGGACCATCTGAAACGTCACTACCGCATCCACACCGGTGAAAAACCCTACCGCTGCAAGTACTGCGATCGCGCCTTCACGCAGAGCAACGACCTCGCCAAGCATACGAGGATGCACGTCGGCCAGAACATCTACGAATGCACCCAATGCGACATGCGCTTCCGTCTCCTGAGCGAGCTGAAACAGCACTACCCCTCCCACTACCTCGGCAACGGAGACGCCGCCCTCGTCCCCGTCACTAAAGACCCCGCCCCCTTACAGCTGGACCCCGCCCCCTTGCTGCTGCGGCCTGAGGAACATAAGGAATCCGAGGGCACTATCACCATCACCTTCAGCAGCAACGGGATGGATAAGGACGGGTTGCACGGGAATATCACTATTGATATTACGCCGCAAAATACGTAG
Protein Sequence: MHNVENCCRTCTKKCEVLVDLHEPWKTENEKCIPLLEILEACTAVQVSKEDGFPQKLCEKCAKALQFIYEFRIQALNSYEELKKIIEAQSNIKNEQIEVELKTENQFDYDFCYDDFLLDDFTKHEPEEKGYVCNECNKHYTNEKKFLNHLKTHDSPNFRCTVCSKKFHKQSSLDRHLAKHFKCIVCLDHFESETALLEHMNQHACVEIKTEPEDTLYKCSECDVAYTKHRSLAMHMKKHRKEDGNGKKKYSCDVCEKEYGLKSLLRRHMKLHSDERPYLCVRCNKSYSRHDQYMEHMNRHNGIKPNICPHCSKAFTQLCSLKDHIRTHTGETPYLCSECGKGFNNGSNLRQHMMRHTGLKPFACHLCPKRFSTKGQMTCHIGTHTGVHPYKCDECGAAFTKPNSLKKHKLIHLGIKPFACDTCAMRFSCKDHLKRHYRIHTGEKPYRCKYCDRAFTQSNDLAKHTRMHVGQNIYECTQCDMRFRLLSELKQHYPSHYLGNGDAALVPVTKDPAPLQLDPAPLLLRPEEHKESEGTITITFSSNGMDKDGLHGNITIDITPQNT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654518;
90% Identity: -
80% Identity: -