Atur046575.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990302.1:11641413-11665882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.9 9e+02 2.3 0.7 3 17 58 72 56 73 0.89 2 12 0.0017 0.19 13.9 0.5 1 23 439 461 439 461 0.96 3 12 0.00018 0.021 16.9 3.7 1 23 474 496 474 496 0.97 4 12 0.0061 0.69 12.1 9.3 1 23 502 524 502 524 0.99 5 12 3.5e-05 0.004 19.2 6.6 1 23 531 553 531 553 0.99 6 12 2.2e-05 0.0025 19.8 0.2 1 23 559 581 559 581 0.93 7 12 2.6e-06 0.0003 22.7 0.0 1 23 587 609 587 609 0.98 8 12 1.6e-05 0.0018 20.2 1.2 1 23 615 638 615 638 0.95 9 12 8.4e-05 0.0095 18.0 1.8 1 23 644 667 644 667 0.96 10 12 3.9e-05 0.0044 19.0 1.1 2 23 674 695 673 695 0.97 11 12 2.8e-05 0.0032 19.5 1.0 1 23 701 723 701 723 0.97 12 12 0.0046 0.52 12.5 0.2 1 23 729 753 729 753 0.94
Sequence Information
- Coding Sequence
- ATGAACCGTGTTGCAAATTGCTTCATTTGTAGCACCACCACCGGTGCTACTAACACCATCAGTCTTATACAAGATACTAGCAACCTTCAATCTGGCAAGAAACTACTGGATATAGTGAGTGAGATTGCTGAGAAACCTTTGCAAGAGGAAGACATACAATCCACAGTAATTTGCAAGAAATGTAGCCAGACATGTAAGGAATATGATGACTTGCAAGTCAGgTTGAAGCACATCAAAACCGAGCTCCACGGGCAGATCCACAAGAGCAGCGAGAGCCCCACGAAGAGCGAGGCCAAGAAAGTGGTGTTGCCGGCCTCCAAGCTGCACCCGCTGCCGCCGGACTTCGTGCTAAACGTCGGCCGGCTAGCGGGGAATGCCGGCCTCGCCACCCCCAAAAACAAGataacACCATCAACACTAAGCCTAAAAGTCACGGTTGGTTCGTCAGTACTGACTCAATGCATCAAAACCACTACAGCGGTACCCAAAAACATTGTTATTCAGAAGCAGGAGGCAACTGAAACTCAGGAGACGTCCGAAGACTTGATGTTTGAGGAGACAAGTCTGCCAAAGGATTTCATGACATCCGTGGTGCTGCAGCGGATAGCCCAGGATGGGAATGTCAACAATGATGATCAGCCTATGGAGATTGATGAAGATTGTTCATATGCGATAGTATCTCAAGAGGAGGGCACAAGCGAAGAAACTGAAAAGAAAGCCGACGACGCATCAGACATGTTCGACGTAAGCTTGCTCTCGTCATTAGAGGACAGCGGCGATGGTGAGCCGCAGAGCGACCAGTACATCGTGGGGAAGCTGGAGATACTCAGCGAAAGGGAGGATGAAGACGACGAGGAGGAACAAACCATCGTGATGTCCAGCGACAACTCGATCCTTCGGGTCGTGTCGGGTCAAAAGCTGGTCTACAGCGACTCCGGCCTGACGTTGCTCGACGACAACGACAACGACGGCCAACCCgacagccaagATGACGAAGATTCACAAATAGAACTCCAGGTCTCCGGAGATGAAGAGACTGCGAACGCCATCATAGCTGCGGCTAGGGAACAAGgTGGTGCATTCATAAAGGTGCAGTCGGGTGAGATGTATCGTGTGAAATCGGTACAGAGCAAGTCCAAGGAAGAAGATGACAAAGAGTTCACAGATCACTTGCAGATTGTGGTGAAAGAGGACGGGTTTTTCAAATGCGTGTTGTGCaagaagaataaaaataaagGGGAGCGAACAAGCCGGTTCACCGGGGACGCGGAGTTTATCATGAGGCACATGCGCGTGCAGCACGACGCGCGCGTCTACATCTGCAGCACGTGCGGCCTGGCCTTGCGCCGCCGAGACCACTACATACAGCATATAGCACAGCACGCGAAAGAAAATTCGACACAAGACAAGAACAAGTTACACGAATGCAACGTCTGTCATAAAAAATacagTTCCAAGACTCTGCTAGTGGAGCATATGAACCTGCATAACGGACAGCGACCATACACGTGTCATATATGCCACAAGAGTTTCGCTTCCAAGTACACGCATCAGTCACACCTCAAAACGCATttggACCGGCCGCGACCCTTCAAGTGTGCGGACTGCGGCAAGTGCTTCTTCACGCTGCAGAACCTGAACCAGCACCACAAGACGCACTCCGGCCTGAAGGAGTTCGAGTGCAACGTGTGCGGCAAAGCATTCGGGACACAACACAACTTAGAGATGCACGGTGTAGTGCACTCGGGACAGAAACCGTTCGTGTGCGGGGTTTGTGGGAAGGCCTTCGCGCGACGAGCAGAAGTCAAAGATCACATGAGGATACATACAGGTGAACGTCCTTTCGCGTGCGACGTGTGCGGAGCGACGTTCTCCCAGCGCTCGAACCTTCACTCGCACAAGCGCGCCACGCACTACGACGACAAGCGGTACAAGTGCGACCAGTGTCCCAAGCGGTTCAAGAGACGCAGATTATTGGATTACCACATAAAGGCGTCGCACACGGGCGAGCGGCCGCTGAAGTGCGAGGTGTGCAAGGCCACGTTCGTGTACCCCGAGCACTACAAGAAGCACATCCGGATACACAGCGGAGAGAAACCTTACGTGTGCGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGTCTCGTGTGCGGCGCCGGCTACATGAGGAAGCAGCTGCTCTACACGCACATGAACACCAGCgGTCACTTGGCAGAGTCGATAGTGGTGAACCAGCCGCGCGTCACAATACAGCGGGTCGCCGACAGCGCGCCCGGAGATAATGTTTACGAGTCTACGGAGGAGTTAGAATTAGAAAATGAGGGAACAAAGACTAGTGAAGGACAAGGCACGGTGTATATAGGCGATAAGAAATATATCCTCCAAGAGGGTAAAACTTCACTGAACCTGGTGCAGGATACCGAAGATATTTTAACTTaTAATTTGGAAGGAGCGTTAAAGACTGAAAGTAATTTATTAGAAGGCGTCACTATTGAACAATTGGGAGAAGAAACTCAGATGGTGGACGCGAGCGGCGGCATCGTGCGCGTCGTGCAGATCACGCTGCCCGACGGCAACAACGGCTGGGTGGCCATCAACCCGTGA
- Protein Sequence
- MNRVANCFICSTTTGATNTISLIQDTSNLQSGKKLLDIVSEIAEKPLQEEDIQSTVICKKCSQTCKEYDDLQVRLKHIKTELHGQIHKSSESPTKSEAKKVVLPASKLHPLPPDFVLNVGRLAGNAGLATPKNKITPSTLSLKVTVGSSVLTQCIKTTTAVPKNIVIQKQEATETQETSEDLMFEETSLPKDFMTSVVLQRIAQDGNVNNDDQPMEIDEDCSYAIVSQEEGTSEETEKKADDASDMFDVSLLSSLEDSGDGEPQSDQYIVGKLEILSEREDEDDEEEQTIVMSSDNSILRVVSGQKLVYSDSGLTLLDDNDNDGQPDSQDDEDSQIELQVSGDEETANAIIAAAREQGGAFIKVQSGEMYRVKSVQSKSKEEDDKEFTDHLQIVVKEDGFFKCVLCKKNKNKGERTSRFTGDAEFIMRHMRVQHDARVYICSTCGLALRRRDHYIQHIAQHAKENSTQDKNKLHECNVCHKKYSSKTLLVEHMNLHNGQRPYTCHICHKSFASKYTHQSHLKTHLDRPRPFKCADCGKCFFTLQNLNQHHKTHSGLKEFECNVCGKAFGTQHNLEMHGVVHSGQKPFVCGVCGKAFARRAEVKDHMRIHTGERPFACDVCGATFSQRSNLHSHKRATHYDDKRYKCDQCPKRFKRRRLLDYHIKASHTGERPLKCEVCKATFVYPEHYKKHIRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKQLLYTHMNTSGHLAESIVVNQPRVTIQRVADSAPGDNVYESTEELELENEGTKTSEGQGTVYIGDKKYILQEGKTSLNLVQDTEDILTYNLEGALKTESNLLEGVTIEQLGEETQMVDASGGIVRVVQITLPDGNNGWVAINP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00658696;
- 90% Identity
- -
- 80% Identity
- -