Atur049990.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- Znf784
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:2626897-2633780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.2 1e+03 2.1 0.1 2 21 29 48 28 49 0.91 2 21 0.049 5.5 9.3 0.9 3 23 62 83 61 83 0.93 3 21 5.1e-06 0.00058 21.8 0.8 1 23 88 111 88 111 0.96 4 21 1.3 1.5e+02 4.8 0.2 2 12 137 147 136 149 0.85 5 21 1.1 1.2e+02 5.0 0.0 5 23 156 175 155 175 0.94 6 21 0.015 1.7 10.9 4.1 2 23 201 222 200 222 0.97 7 21 0.00017 0.019 17.0 0.4 1 23 228 250 228 250 0.96 8 21 0.058 6.5 9.1 0.1 2 21 257 276 256 277 0.93 9 21 0.058 6.5 9.1 0.1 2 21 294 313 293 314 0.93 10 21 0.058 6.5 9.1 0.1 2 21 331 350 330 351 0.93 11 21 0.058 6.5 9.1 0.1 2 21 368 387 367 388 0.93 12 21 0.058 6.5 9.1 0.1 2 21 405 424 404 425 0.93 13 21 0.058 6.5 9.1 0.1 2 21 442 461 441 462 0.93 14 21 0.058 6.5 9.1 0.1 2 21 479 498 478 499 0.93 15 21 0.058 6.5 9.1 0.1 2 21 516 535 515 536 0.93 16 21 0.058 6.5 9.1 0.1 2 21 553 572 552 573 0.93 17 21 0.058 6.5 9.1 0.1 2 21 590 609 589 610 0.93 18 21 0.058 6.5 9.1 0.1 2 21 627 646 626 647 0.93 19 21 0.058 6.5 9.1 0.1 2 21 664 683 663 684 0.93 20 21 0.0058 0.66 12.2 0.5 2 23 701 722 700 722 0.97 21 21 6.7e-05 0.0076 18.3 2.4 1 23 728 751 728 751 0.96
Sequence Information
- Coding Sequence
- ATGCTCTACTCTGGAGACTGCGGCCTGACCGTCGTGCGGGGAGACCTTCACCAGCCGCAAAAGAAGATCAGTTCACCCGCTCTAAGATGTCGAAGGTGCGCCGTTCAGTTCGATAACCTGGAAGCCATCAAGAGGCATAGAGAAACGCGGCCCGACAAGAAATGCGACCCCAGTTTAAGTGCGTGCGAGTCGTGCGGCGAAACGTGCGCGAGCGCAGACGAGCTAATTATGCATCGCCATCAACAACACAACGTCGAGCTCTTCACATGCGACACCTGCACGAAATCCTTCACATCGAAGGATTCCCTAGCTACCCACATAGACCGCATCCACCGCAACGTGCGGCCGCCCAAGATGGACTACAGCGACGGCGGCCGCCGCAAGCAGGACTGGCTGCACTGGGCGTCCGTCTGTGAACATTGCGGGAAGAGGTTATCGCAATATCGCTTTGATATTCAAGCTGTATACTGCACTGAATCCTTCACATGGAAGGGTTCCCTAGCTACCCACATAGACCGCATCCACCGCAACGTGCGGCCGCCCAAGATGGACTACAGCGACGGCGGCCGCCGCAAGCAGGACTGGCCGCATTGGGCGTCCGTCTGTGAACATTGCGGGAAGAGGTTATCGTGTCGAGCCACGTTGAAGATTCACATGAACAAGCATACAGGGGAACGCCCATACAAGTGTACGCTTTGCCCTAAAGCGTACATGACACCATACGGACTTAATAACCACCAGGCGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGGTAACAACACGTCCCACTAGTAATACGTTCCACACGGGCGTGCGCAAGTGGCGCTGCGGGGAGTGCCCCGCCACCTTCATGCACCAGTCCTCCGTGTACGTGCACAGGAAGATACACACAGGCGAGCGACCTCACCAATGCACGATTTGCGACAAATACTTCACTCAATCCGGCTCGCTCTACACTCACGTCAAGTATGTCCACATGAAGgagacgccgccgccgcgcaagCGCAACAGGAAGACTGCTGCTTAG
- Protein Sequence
- MLYSGDCGLTVVRGDLHQPQKKISSPALRCRRCAVQFDNLEAIKRHRETRPDKKCDPSLSACESCGETCASADELIMHRHQQHNVELFTCDTCTKSFTSKDSLATHIDRIHRNVRPPKMDYSDGGRRKQDWLHWASVCEHCGKRLSQYRFDIQAVYCTESFTWKGSLATHIDRIHRNVRPPKMDYSDGGRRKQDWPHWASVCEHCGKRLSCRATLKIHMNKHTGERPYKCTLCPKAYMTPYGLNNHQAFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKVTTRPTSNTFHTGVRKWRCGECPATFMHQSSVYVHRKIHTGERPHQCTICDKYFTQSGSLYTHVKYVHMKETPPPRKRNRKTAA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -