Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990307.1:4825635-4833881[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00013 0.014 17.4 0.3 1 23 192 215 192 215 0.96

2 12 0.005 0.57 12.4 3.2 1 23 219 242 219 242 0.97

3 12 0.0036 0.4 12.9 1.2 1 23 248 271 248 271 0.96

4 12 6.4e-05 0.0072 18.4 2.4 1 23 277 299 277 299 0.99

5 12 0.002 0.23 13.6 0.4 2 23 307 329 306 329 0.96

6 12 1.4e-05 0.0016 20.4 4.4 1 23 335 357 335 357 0.98

7 12 1.6e-06 0.00018 23.4 1.1 1 23 363 385 363 385 0.98

8 12 9e-05 0.01 17.9 1.4 1 23 390 412 390 412 0.99

9 12 0.00021 0.023 16.8 2.8 1 23 418 440 418 440 0.95

10 12 5.3e-06 0.0006 21.7 1.3 1 23 446 469 446 469 0.96

11 12 4e-05 0.0045 19.0 0.5 1 23 503 525 503 525 0.97

12 12 0.00082 0.093 14.9 1.6 1 23 531 554 531 554 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00013	0.014	17.4	0.3	1	23	192	215	192	215	0.96
2	12	0.005	0.57	12.4	3.2	1	23	219	242	219	242	0.97
3	12	0.0036	0.4	12.9	1.2	1	23	248	271	248	271	0.96
4	12	6.4e-05	0.0072	18.4	2.4	1	23	277	299	277	299	0.99
5	12	0.002	0.23	13.6	0.4	2	23	307	329	306	329	0.96
6	12	1.4e-05	0.0016	20.4	4.4	1	23	335	357	335	357	0.98
7	12	1.6e-06	0.00018	23.4	1.1	1	23	363	385	363	385	0.98
8	12	9e-05	0.01	17.9	1.4	1	23	390	412	390	412	0.99
9	12	0.00021	0.023	16.8	2.8	1	23	418	440	418	440	0.95
10	12	5.3e-06	0.0006	21.7	1.3	1	23	446	469	446	469	0.96
11	12	4e-05	0.0045	19.0	0.5	1	23	503	525	503	525	0.97
12	12	0.00082	0.093	14.9	1.6	1	23	531	554	531	554	0.97

Sequence Information

Coding Sequence: ATGACGGAAATTTGGAGTTTGCACGCTCTGTGTCGATGTTGTCATGCCGACGGTGAATTCAAAGACTTACGATCGCAGTACATGCACGATAACACGGCTGAAAATTATCTTAATATGTTATTGGAGACCTTGGGAGTTACGATAAAACCTCCCCCTGTTAATGCCAGCTATGCAATCTGTGACAGTTGCATTCGTCAGCTCAGACATGCTACCGATTTTAAGAAGAAGGTCCTCGAATGTGAAACCAAATTTGAAGAATATTGCAAAAATGAGTTATCTCTCAACTATGATATAAAAGCAGAACCAGAATATTTAGGTGATGATATTGAAGTGAAAgactcattaaataatagtaagaATGAAGTATACAACATCAGTATTAAGAAGCCAGTCAAAATCAAGAACATCAAAAAAGAAACTGATATAGAAATCTCAATAGATGTGAAACCAAAGGTGGAAGGCAAACCGACCAAGAAAAGAAGCAGGCAGCATGTGAAAGGTAAAACTCCTAAACCCAAGCCCAACGAAGAAGAGTCGTTAGTAGTCAAAGTCGAAACGGAAACCGGAGAGCAGTATTCCTGCAAAAACTGTGGCATCAGCTATGACACTTTAGAACAGCTCAGCAGTCACATTAACCAAGAACATTTCAAAGGTTTCAAGTGTTTGCACTGCGACGAACAATTTAAGACCGAATTGCAATATAAGACCCACAATCGCGTGATACATAACGACTCAAAGCCTTTTCCTTGTGAACATTGCGGTAAAAAAATGACCACAAAACTAAATGTAACTACTCATGTGAACTCAGTACATACTAAGGAAATTTTCTACCAATGCGATGTATGTCAAAAAATCTTCCATAACAAACAGGTTTTGAGGATACATATTAGGAAACATTATGGTACTTTTAGGAAATTAATTTGTGAGCAGTGCGGGGTAGGGTGTAACGATAGGACGAATTTGAGGTACCATGTTATGACTGTCCATGAGAAGCAAAGACTGTTTCATTGCAATGAGTGTGACAAGAAGTTTACAGCGGCGAAGCATTTGAAGATTCACATCAGATCGCATACCGGAGAACGTCCATTCGAGTGTGATATATGCCATCGTGCTTTCGCCTCTAAAGACAACTTGACTATACacaaaaagatacatacagacagtGGATATAAGTGTAAAACTTGTGCTAAAGTCTTCCCAACTAGAGGACTATATGCATCGCATTATAGGAAGCACGTTGGCACCAAACCATTTAATTGCCATTTGTGCAACAAAGAATTTGCTGGGAAATATTCGTTGAATAGGCATCTTTTCGAGCATACCGGCGCTCGGCCATTTATGTGCCCAATTTGCGGTAAAGATTTCAAACAGAAGAATCTACTAGTGAGGCATAACAAGCGATTCCATGATCCACATAAGCCTGATGTTATTAAAGAGAAGTGTGATCTGTGTAAAAAGACAGTTCCGAATATAGAGAAACATATGAAAGCGCACATAAATAAGCCATATGCTTGTAATTTGTGTGAGAAAAGATATCCACAGAAGAACGCTTTGAATAGACATTTGGAAAGACATACAGGCACCAAACCGCATCAATGTGATTTGTGTGATAAAGGATATATGCAATTAAAAAGTCTTAAGGCACATAAGATGAAAGTGCACAAGCTGCCTGTGAAGACTGAGCAGGAAGATCACTATGACAGTATCGTGACTAAGTATACGATTCAGAATatgaaaataaagtaa
Protein Sequence: MTEIWSLHALCRCCHADGEFKDLRSQYMHDNTAENYLNMLLETLGVTIKPPPVNASYAICDSCIRQLRHATDFKKKVLECETKFEEYCKNELSLNYDIKAEPEYLGDDIEVKDSLNNSKNEVYNISIKKPVKIKNIKKETDIEISIDVKPKVEGKPTKKRSRQHVKGKTPKPKPNEEESLVVKVETETGEQYSCKNCGISYDTLEQLSSHINQEHFKGFKCLHCDEQFKTELQYKTHNRVIHNDSKPFPCEHCGKKMTTKLNVTTHVNSVHTKEIFYQCDVCQKIFHNKQVLRIHIRKHYGTFRKLICEQCGVGCNDRTNLRYHVMTVHEKQRLFHCNECDKKFTAAKHLKIHIRSHTGERPFECDICHRAFASKDNLTIHKKIHTDSGYKCKTCAKVFPTRGLYASHYRKHVGTKPFNCHLCNKEFAGKYSLNRHLFEHTGARPFMCPICGKDFKQKNLLVRHNKRFHDPHKPDVIKEKCDLCKKTVPNIEKHMKAHINKPYACNLCEKRYPQKNALNRHLERHTGTKPHQCDLCDKGYMQLKSLKAHKMKVHKLPVKTEQEDHYDSIVTKYTIQNMKIK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -