Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990281.1:7573979-7581851[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.019 2.1 10.6 0.3 3 23 169 189 168 190 0.93

2 27 1.8 2.1e+02 4.3 0.1 2 23 194 216 193 216 0.90

3 27 0.25 28 7.1 6.6 2 23 222 244 221 244 0.96

4 27 0.0013 0.15 14.2 1.2 2 20 253 271 252 271 0.95

5 27 0.0002 0.023 16.8 0.6 1 23 280 302 280 302 0.97

6 27 0.067 7.5 8.9 0.1 1 23 308 331 308 331 0.90

7 27 0.25 29 7.0 0.5 2 21 337 356 336 357 0.91

8 27 0.36 40 6.6 0.7 3 23 363 381 362 381 0.89

9 27 0.00055 0.063 15.4 1.7 1 23 387 409 387 409 0.97

10 27 0.00073 0.083 15.0 0.5 2 23 416 437 415 437 0.98

11 27 9.7 1.1e+03 2.0 0.2 8 23 441 456 440 456 0.91

12 27 0.00073 0.083 15.0 0.5 2 23 463 484 462 484 0.98

13 27 9.7 1.1e+03 2.0 0.2 8 23 488 503 487 503 0.91

14 27 0.00073 0.083 15.0 0.5 2 23 510 531 509 531 0.98

15 27 9.7 1.1e+03 2.0 0.2 8 23 535 550 534 550 0.91

16 27 0.00073 0.083 15.0 0.5 2 23 557 578 556 578 0.98

17 27 9.7 1.1e+03 2.0 0.2 8 23 582 597 581 597 0.91

18 27 0.00073 0.083 15.0 0.5 2 23 604 625 603 625 0.98

19 27 9.7 1.1e+03 2.0 0.2 8 23 629 644 628 644 0.91

20 27 0.00073 0.083 15.0 0.5 2 23 651 672 650 672 0.98

21 27 9.7 1.1e+03 2.0 0.2 8 23 676 691 675 691 0.91

22 27 0.00073 0.083 15.0 0.5 2 23 698 719 697 719 0.98

23 27 9.7 1.1e+03 2.0 0.2 8 23 723 738 722 738 0.91

24 27 0.00073 0.083 15.0 0.5 2 23 745 766 744 766 0.98

25 27 9.7 1.1e+03 2.0 0.2 8 23 770 785 769 785 0.91

26 27 0.00073 0.083 15.0 0.5 2 23 792 813 791 813 0.98

27 27 3e-05 0.0034 19.4 2.7 1 23 819 841 819 841 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.019	2.1	10.6	0.3	3	23	169	189	168	190	0.93
2	27	1.8	2.1e+02	4.3	0.1	2	23	194	216	193	216	0.90
3	27	0.25	28	7.1	6.6	2	23	222	244	221	244	0.96
4	27	0.0013	0.15	14.2	1.2	2	20	253	271	252	271	0.95
5	27	0.0002	0.023	16.8	0.6	1	23	280	302	280	302	0.97
6	27	0.067	7.5	8.9	0.1	1	23	308	331	308	331	0.90
7	27	0.25	29	7.0	0.5	2	21	337	356	336	357	0.91
8	27	0.36	40	6.6	0.7	3	23	363	381	362	381	0.89
9	27	0.00055	0.063	15.4	1.7	1	23	387	409	387	409	0.97
10	27	0.00073	0.083	15.0	0.5	2	23	416	437	415	437	0.98
11	27	9.7	1.1e+03	2.0	0.2	8	23	441	456	440	456	0.91
12	27	0.00073	0.083	15.0	0.5	2	23	463	484	462	484	0.98
13	27	9.7	1.1e+03	2.0	0.2	8	23	488	503	487	503	0.91
14	27	0.00073	0.083	15.0	0.5	2	23	510	531	509	531	0.98
15	27	9.7	1.1e+03	2.0	0.2	8	23	535	550	534	550	0.91
16	27	0.00073	0.083	15.0	0.5	2	23	557	578	556	578	0.98
17	27	9.7	1.1e+03	2.0	0.2	8	23	582	597	581	597	0.91
18	27	0.00073	0.083	15.0	0.5	2	23	604	625	603	625	0.98
19	27	9.7	1.1e+03	2.0	0.2	8	23	629	644	628	644	0.91
20	27	0.00073	0.083	15.0	0.5	2	23	651	672	650	672	0.98
21	27	9.7	1.1e+03	2.0	0.2	8	23	676	691	675	691	0.91
22	27	0.00073	0.083	15.0	0.5	2	23	698	719	697	719	0.98
23	27	9.7	1.1e+03	2.0	0.2	8	23	723	738	722	738	0.91
24	27	0.00073	0.083	15.0	0.5	2	23	745	766	744	766	0.98
25	27	9.7	1.1e+03	2.0	0.2	8	23	770	785	769	785	0.91
26	27	0.00073	0.083	15.0	0.5	2	23	792	813	791	813	0.98
27	27	3e-05	0.0034	19.4	2.7	1	23	819	841	819	841	0.98

Sequence Information

Coding Sequence: ATGAATTTGTGTAGAGCATGTTTATCTTCGGATAGAGAGTTGTTTCCAACTGATGATAATTTTATTAGCAATTATAGTTTGCTTACTAATATAAATATTAAATGTACTGATGGGAAGCCTCAACATGTTTGCCGAACTTGCATGGAAGCTGTTAACTTTTTCATTGAGTTTAGGAATAAGTGTGTTTTTGCCGAAACTGCCTTGTTGGACATTTTAAAACAGGTCAAGTCTGAGGCTGCAGTAGAAATTGGAACATTAAATGTGAAAGTGGAAGTGAAGGATGAAACTGAAGACTGCGGTTCTGAGTTTTTCTTAGAGGATGCACAACACAATTACACAGAGGATGACAGCAGTAACATTAAAAGAGAAGAAAACCCTGaTGTGAAGAAGAAGAAACCAAGAAGacaaactaaaagaaaaaagagaaaaatcccaaaagaaaaaaatagtgttaCCGTCACTAGTAAAGCAAATTATGTTCAACTGACTAATGAAAAACCAATTTGTGgtCTCTGTGCTGAAGCATTCGAAGATAGAACctcattaaataaacacctaGAGGGTCACCACACAGACAAGAAGTGTCAGTTGTGCTCTGGAATCAAATTCGAGTCCTGGCCACAGCTCCTTGCGCACCGGATACTGCACACGGTGCACCACCAGAAATGCCATCTTTGCAATGTCAAATTTAGATCACACACGAATTTGGAATTCCACTACAGAAAAATGCACTCTGGAGAAAAGaatGTTGTCCTGACTTGCCATTTATGTCCGCGGAAATTTAATACTCCAAAAAAATTATCGAAACACATATGGGGATTGcacaataaaaatgaatacatttgtGATATTTGTTCCAAATCGTACAATAATAAACAGAGATTGAAGCTTCACATTATGGGCCATGGCGACGCTAAGCCGTACGTGTGCGACCTGTGCGGGTACCGCAGTAAATATGCTACGGGACTTGCGGCTCACAATGTAAGGAGACATGAACCCCAGAAGTGCATCTGCAAGAACTGCGGCACCGCGTACGCGGGCGCCGAGCGGCTCGCGCGGCACACGTGCGTCGACCGCAGCCGCATCTGCCCCGTCTGCGGCAAGAGCCTGCGGCATGGGTTCACCCGTCACGTGGCGACGCACACCGAGGAGCGGCCGTACAAGTGCGACCGGTGCCCGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGTGAGACGTCGTACAAGTCGCGGACGGCGCTCAAGGTGCACAAGGACAAGCACGACGGCAACCCGACGCAGCAGTGCGAGTACTGCCTCGCGCGGTTCTACAACCCGTCCGTGCTCACCAAGCACCGCCGCATACACACCGGCGAGAAGCCATATGCGTGCAAGAAGTGCGAGATGCGGTTCACCGGCCGCCACAACCTGAAGGTACACATGAAGGTGCACGGCGAGATGCTGGTCGTCAAAAGGAACCCAGAGCCAGTATAG
Protein Sequence: MNLCRACLSSDRELFPTDDNFISNYSLLTNINIKCTDGKPQHVCRTCMEAVNFFIEFRNKCVFAETALLDILKQVKSEAAVEIGTLNVKVEVKDETEDCGSEFFLEDAQHNYTEDDSSNIKREENPDVKKKKPRRQTKRKKRKIPKEKNSVTVTSKANYVQLTNEKPICGLCAEAFEDRTSLNKHLEGHHTDKKCQLCSGIKFESWPQLLAHRILHTVHHQKCHLCNVKFRSHTNLEFHYRKMHSGEKNVVLTCHLCPRKFNTPKKLSKHIWGLHNKNEYICDICSKSYNNKQRLKLHIMGHGDAKPYVCDLCGYRSKYATGLAAHNVRRHEPQKCICKNCGTAYAGAERLARHTCVDRSRICPVCGKSLRHGFTRHVATHTEERPYKCDRCPTSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGETSYKSRTALKVHKDKHDGNPTQQCEYCLARFYNPSVLTKHRRIHTGEKPYACKKCEMRFTGRHNLKVHMKVHGEMLVVKRNPEPV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -