Atur047274.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:1917213-1925520[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.016 1.8 10.8 0.2 1 23 91 114 91 114 0.93 2 22 0.26 29 7.0 0.1 2 23 141 163 140 163 0.92 3 22 0.00019 0.022 16.8 0.9 1 23 211 233 211 233 0.98 4 22 0.0067 0.76 12.0 0.3 1 21 267 287 267 290 0.90 5 22 0.27 31 6.9 0.1 1 23 342 364 342 364 0.94 6 22 4.2 4.8e+02 3.2 0.1 2 23 388 410 387 410 0.93 7 22 0.0003 0.034 16.2 1.9 1 23 432 454 432 454 0.98 8 22 0.0052 0.58 12.3 0.3 3 23 460 480 459 480 0.95 9 22 0.024 2.8 10.2 0.4 1 23 488 511 488 511 0.95 10 22 0.42 47 6.4 0.3 1 23 517 540 517 540 0.91 11 22 0.045 5.1 9.4 3.2 1 23 546 569 546 569 0.96 12 22 0.00041 0.046 15.8 0.2 1 23 575 597 575 597 0.96 13 22 7.2e-05 0.0081 18.2 1.1 1 21 603 623 603 624 0.97 14 22 3.8 4.3e+02 3.3 3.1 1 23 684 707 684 707 0.92 15 22 0.025 2.8 10.2 2.3 1 23 773 795 773 795 0.96 16 22 7.5e-05 0.0084 18.1 1.5 1 23 799 821 799 821 0.98 17 22 0.0092 1 11.6 0.1 1 23 826 849 826 849 0.95 18 22 0.0013 0.14 14.3 2.7 1 23 855 878 855 878 0.98 19 22 0.021 2.4 10.4 1.6 1 23 885 908 885 908 0.95 20 22 0.00053 0.06 15.4 0.9 1 23 914 936 914 936 0.96 21 22 9.7e-06 0.0011 20.9 0.5 1 23 942 964 942 964 0.99 22 22 8e-06 0.00091 21.2 3.0 1 23 970 992 970 993 0.96
Sequence Information
- Coding Sequence
- ATGCTGCAATATGAATTGACTGAATTCAGGAcctggtcccgccattataatggtTCCGCTAATGCGGACGCGGAGGCAAAAGTAGGAGTTAGACGTGTTAGGCAGTTAAAGGAGAATGTAAGCGCACGGCAgatgcgccggcgccgccgcgccAACAACGAGTTGCCGGAAGAGTCCGAGAaacgtatttccaaaactatgATGCGAAGGAACGCTATGACACTTCTGGAATGTTCCACCGCTTGGGCCTTCCGCTGGTTCCACAGCGCTTTTTACTGCTCGTATTGTGATGCTAAGTTTGTAGATACCGGCCCGTTGCGTGAACACGTGGAGAATAACCATTTAGCTAACCCGCCTACTAATAGAATATTTTCAAAGTTAACGGAAAATAATATGGTTAAGATAGATATAGGGAATCTCAGTTGCAGATTATGCAACTATCCTCTGACAGATATTGACGATTTGAAAGATCATCTAGTATCTCAACACGAGAAAACTATCAACTTGGAATATAGCGACGGAGTGCTGCCTTTTAAACTAGACCAAAACGGATTCTTCTGCCAAAAATGCTTTTCTCATTTCGTCAGCTTCTGTAAAGTGAACGAGCACATCAATATTCATTATAAAAACTACATTTGTGACTCGTGCGGTAAAGGATTCGTGTCTAAATCTAGATTTCGGACTCATGTCCAATCCCATGAAATTGGTTGCTTCCCCTGTGGGGATTGCAATGAAGTGTTAGAAACAAGAGCCGCTCGAATGTGTCACAGATTGCGTGTCCACAAAAAAGGTGTAAGGTATACATGTCCTCGTTGCCCAGAAGTGTTCAAAACGTATTACGCGAGATTAAAGCATTTAGTAGATGACCACGCTCAGCAGCAGCGAGATTACGATTGTGCTGACTggtCCATCGACCTCAAACTTAAATGGAAACCGAAACGCAAGTATAACGATCACAGAGACAATGCGGCTATTATAATAGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGGGGGGCCTTCACCTGCGCCTTCTGTCCTATCTCCTTCGGGGATTTCAGCGGCGTCAGAGACCACGCCCTCGAACACCCTAACCGGGTCGAGGCGATGCGTCTGGCCCGCCCCTTGGACAACGTCAAAGTAGAGATCAGCGGCCTTCGCTGCGAACTCTGTCTACAACCCATTAAAGACGTTGAAACACTAAAGGAACACTTGCTTCAAATCCACAATAAGCCAATTAGCAAAGATCACACCATCGGCGTCACTCCATTCCTAATCAAAGGAAAGGACTTCGTTTGCACACATTGTGGAGAAGAATTTGAGCTGTTTTCCAAATTAAATACGCATATGAATCAGCATTATCCAAACAACATATGCTTTCAATGTGGCAAAGCGTTCTCTGCTGCGCACAGGCTTAAGGCTCACTTAGTTATACATGAAGCTTCGAACAGTCTCCAATATAAATGTTCTAAATGCGAGGATGTGTTCACGACACGGGCGTTAAAGAACAGCCACATGGCATTAGCACACGGTCCGGAGTACCGCTATAGATGTCCGTACTGTAACGACTCGTTCTTAAGATATGCAGATAGGGCTAAACATCTCAAGGCTGCTCATGATAGGAAAGTCGAGTACCCTTGTCATTTATGCAATGCCGTATTCTCTATGTGCAATCAAAGAACTAAGCATATACAACAAGTGCATATACGACATAAGCAATTCTTCTGCGCGCTGTGCCCATATCAATTCGTCACCGCGGCACAACTTAGGAATCACATGGTCAAACATATAGGGGAGCGAAAGTACCAATGTCAGGTCTGTAAGAAATCCTACGCCAGAACAAAAACGCTGAGAGAACACATGCGACAGAAAGGTGAAGAGGTCGTTCAGGTCAAACAAGAATTGGCTGACACTGAGGATATTAACGCTGCATCCGCTGCCGCTAAACGAGAGGAGGGCGAACGCAGGCGGACCAACTTTAGAAATAATATCTCTACTATCATAGACACGACCACAGTATACCCTTTTAAATATCGAAGAGGGATGTACCTCTGTTACTACTGCAAACATACATTCCTGGAACCCGAAAAACTCCGACAACACAACCGTCTCTACCATTCCGAATCAAAAGTATTGCCGAAACCCAGAAAATATGAACCAGTGAAGATGGATTTCGCTACAGCTTTATGCAAGCTTTGTTTTACTGAAATTCAAGACTATGTCATGATGAAAAATCATTTAGTAGAACACGGTAAAGAGATAGACACGACATACGGTGATAGCGTGCTTCCCTATAAATTGAGTAAAGATGAACACGTATGTCAGGTATGCGGGAAAATATACGAGATGTTTTTGAGTTTACATAAACACATGAACGATCATTACGAGCATTATATTTGTGAAAAATGTGGGAAAAGATTCGCGACATCCCAACGTATGCTCAACCACACGCGCACGCACGAGCGCGGCGTGTTCCCGTGCAAGCTGTGCGATCAAACCTTCCCATCGTACGCACCATTGTACACTCACGTGGCAAAAGTACACAGATCGAACAAGAGATACAAATGCCCCATATGTAACGAGAAATTCGTCTCTTACAAGCAGAGGCTAAAGCATCTGCATACGGTCCACGAGCAGAAAACACCCGTTTTCCCCTGCCCTTCGTGCGACCGGGTCTTTGATTTGTGCAGCAAGAGAACTGCTCATATCAGATTCCAACACTTGCAAGAGCGGAACCACGTGTGCAGCGTGTGTGGTATGAAGTTCTTTAGTAACTACGAACTTCAAGAACACGCTATCAAGCACGGTGGCGAGAGGATTTATCAGTGCGATGTTTGCAAGAAGGCGTACGCGAGAATAAAGACGCTGAGAGAACACATGCGAATCCATAACAATGATAGGCGATACACTTGCCCTGTTTGCGGTCAGAGTTTCATCCAAAACTGTAGCATGAAGCAGCATATTAGGGTCCATCACCCCACGCATATGAAAGATGTATTTTAA
- Protein Sequence
- MLQYELTEFRTWSRHYNGSANADAEAKVGVRRVRQLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFVDTGPLREHVENNHLANPPTNRIFSKLTENNMVKIDIGNLSCRLCNYPLTDIDDLKDHLVSQHEKTINLEYSDGVLPFKLDQNGFFCQKCFSHFVSFCKVNEHINIHYKNYICDSCGKGFVSKSRFRTHVQSHEIGCFPCGDCNEVLETRAARMCHRLRVHKKGVRYTCPRCPEVFKTYYARLKHLVDDHAQQQRDYDCADWSIDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGAFTCAFCPISFGDFSGVRDHALEHPNRVEAMRLARPLDNVKVEISGLRCELCLQPIKDVETLKEHLLQIHNKPISKDHTIGVTPFLIKGKDFVCTHCGEEFELFSKLNTHMNQHYPNNICFQCGKAFSAAHRLKAHLVIHEASNSLQYKCSKCEDVFTTRALKNSHMALAHGPEYRYRCPYCNDSFLRYADRAKHLKAAHDRKVEYPCHLCNAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHIGERKYQCQVCKKSYARTKTLREHMRQKGEEVVQVKQELADTEDINAASAAAKREEGERRRTNFRNNISTIIDTTTVYPFKYRRGMYLCYYCKHTFLEPEKLRQHNRLYHSESKVLPKPRKYEPVKMDFATALCKLCFTEIQDYVMMKNHLVEHGKEIDTTYGDSVLPYKLSKDEHVCQVCGKIYEMFLSLHKHMNDHYEHYICEKCGKRFATSQRMLNHTRTHERGVFPCKLCDQTFPSYAPLYTHVAKVHRSNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHAIKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHMKDVF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -