Atur048662.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- ZFX
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:16309807-16317945[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00015 0.017 17.1 1.4 2 21 172 191 171 192 0.94 2 27 5.8 6.6e+02 2.7 0.2 3 23 200 220 199 220 0.82 3 27 0.56 64 5.9 0.1 1 23 225 248 225 248 0.91 4 27 0.00029 0.032 16.3 1.3 2 23 254 275 253 275 0.95 5 27 0.017 1.9 10.7 2.6 2 21 279 298 278 299 0.92 6 27 0.057 6.5 9.1 0.4 2 23 342 364 341 364 0.94 7 27 1.4 1.6e+02 4.7 0.5 3 23 372 391 371 391 0.76 8 27 0.0021 0.23 13.6 0.2 1 23 397 419 397 419 0.98 9 27 0.097 11 8.3 0.5 1 23 425 448 425 448 0.96 10 27 0.023 2.6 10.3 0.2 1 23 457 480 457 480 0.97 11 27 0.26 30 7.0 6.7 1 23 490 512 490 512 0.98 12 27 2 2.2e+02 4.2 1.2 2 10 631 639 630 651 0.83 13 27 0.0028 0.32 13.2 1.5 2 23 682 704 681 704 0.95 14 27 0.0012 0.13 14.4 3.3 1 23 709 732 709 732 0.96 15 27 3.6 4e+02 3.4 2.6 3 21 737 755 736 756 0.90 16 27 0.00032 0.036 16.1 0.2 1 23 767 790 767 790 0.94 17 27 0.00048 0.055 15.6 4.0 1 23 797 819 797 819 0.98 18 27 0.15 16 7.8 2.7 1 23 826 848 826 848 0.98 19 27 0.00023 0.026 16.6 0.2 1 21 867 887 867 888 0.95 20 27 5.8e-05 0.0066 18.5 0.2 2 21 992 1011 991 1012 0.94 21 27 0.018 2.1 10.6 2.8 3 23 1045 1065 1044 1066 0.95 22 27 0.0025 0.29 13.3 0.1 3 23 1073 1093 1071 1093 0.96 23 27 5.5 6.2e+02 2.8 5.7 2 22 1097 1117 1096 1117 0.91 24 27 0.00041 0.046 15.8 1.4 1 23 1129 1152 1129 1152 0.95 25 27 0.00016 0.019 17.1 0.5 1 23 1158 1180 1158 1180 0.96 26 27 3.6 4.1e+02 3.4 0.3 1 23 1214 1237 1214 1237 0.87 27 27 0.0024 0.28 13.4 0.9 3 23 1247 1268 1246 1268 0.97
Sequence Information
- Coding Sequence
- ATGAATCGTCAAGTGGATGTAAAAGCGTTAGTGTCTCATATAGTGAGAGGCGATGGCTTGGACAAATGTCGGATTTGCATGGGGGACACCTCTGAAGGCCAAGTTTATCTCGGAGACACGGTTATGATGGATGGCGAACGACCAGTGACGCTTGCTGAGCTGCTCGAAATTATCACAGGAATCGAGGTTCCCCTGGAGGAGGCCCTTCCCGCCGGGCTGTGCACAGCGTGTGCCCACTGTGCTATGGAAGCTGCCAGCTTCCGAACTGTATGCAGGCAAGCCATGAGTCAGTGGGACACTACTCTACAGCTACTGACAAACTCTATGCCGCAGAAGCACCCTAGTGCTCCTAGTATGTATATTGTCCTCGACAAAGACCAAGTCACAATTGTTGAGGACTTGAAACATTTGGATCCAGCTCATATTGCAGCTGAACGGTTAACAGCACGGATTGTTCAGCAAGTCAAACAGATGAAGGCAAAAGAAGCTTTGAAGGTAGTTAAGCATAAATGCCAATGTCCAGACTGCGGTAAAAAGTTTGTATATGCTCATGAGTTGTATACGCATTTAAAGGAGTCCACTGATTTTAAACGGGCTTGCTATGTTTGTGCCAAGATCATGACAAGAGATGATTTGATTAAACACTTAAAGTCATACCATAAGCTGGAGCCGTATGATTGTAAGAAGTGTCCAGCGTTGTTACGGTCACGAAAACTGCTAGTTAAGCATGTAGCAGAGGCTCACGGGTCTGGCGCATGCACCTGCGGTGACTGTGGGCGTAGTTTCAAGAGCGCACCAGCTTTCCATGCTCACCTGTCTGTCCACTCGGTCAAGACTTGTCCACGATGCGATAAAGTATTCCGGAACCAAACATGTTACTTATATCATGTAAAAAAATGTTGCAAATTGGAGACCAGTAACATAACTCATCGGACAAAGACTGGAGTATCAATAgaagttaaaaataagaaaagcgAGAGGAAGACTAGAGTGGGTCTTCGTGGGGCAGCGGATAAAGCATGCATCTGTGACTATTGCGGGAAGAAATTAGCAGGGAAGAAATATATAGCAACTCACATACAGATTGTACATATGAAGAATACCCACCGTCCCTGCCCGTACTGTGGAAAATTCCTCGCATCAGCTCACATGGGAGAACACCTTAAAAAGCACGAGCTTGAAACAGTTTTCACATGTGAATACTGTGGTATAGTCTTGAAAACAAAACTGGGCTACGTCCAGCACATACGTCTTCACACCGGCGAGAAGCCATATGACTGCCAGTACTGCGGTGACTCGTTCTCAGCATCTTCCAGAAGATCCGAGCATATCCGTAAAGTACATAAAACTGAGAACACAGTACTGAAGTACATTTGTGAATTCTGCCCAGCCAGATTTCAACTTCCGTACAAACTTAGGAATCATGTCTCTACTGTACATAATAAAGAGGATGCAGCGGCCGTGCCGTTCTCTtgcaaaatttgtatggagaaattcaGTAGCTGTAGAGGGCTGACACACCACAGTAGGAAACATCAAAAGATTGTGGAGACGTCGGCTCTGCTGCCGAACAGGATCTGTGGGGGCTGCGCCAGCGCCGTAGCGCCCACCATCCGCCTTATCGAGTACCTCAGAGACGCGGACAGGAAGTGGAGGGACGCCTCCGACTATATCGAGCAGCTACATTTCAAAGACAACGTCAAAACCGCTTATATAGTCGTCGATAACAATGTGAGAGACATCACGACTTACACTGAAAACGTGCGTCGATCTGATTGCCCCGAGAAGATTTATAAGAGCTTTAAAAAGAGGAAAAATCAGCAGAACGCTGTCAGAAGACGGAACGAGCTGGAACGGAAGCTAAGGGATTCAGAAATCAGCACCAGCTTAAAATGTCCGGAGTGCGAGAAATCTTTCCTGTGCGTCTACAAATATAACATGCATATGAGGTATTACGACAAGCGGGCGTGCGTGCACTGTCGGGAGATGATCAAAGTTGAAGATCTGAAAGGCCATTACGCTGAGCATGGGGTGGATACTATGCAATGTAATATTTGCTATGAAACTTTCAAGAAAAAGGACGCGTTCTTAAAGCATAAAGTGACCTATCACAGCAAGGGTCCGTACTTCTGCTACATTTGCAAGCTGTCCTACCGAGACCCGCACCACCTGGCCGCACACATGACCAGCAAACACGAGCCTCGGATCTGCCTCGCTTGCAACCGGAAGTTCTCAAACGTGTACTGCTTCAGAACGCACTCGAGGAAGTGTAAGAATTCGCAACAGAGAGGAGGAGTTTTCATCTGCGACATTTGTGCTAAAGTATACCGTTCTAAATACGCGTTAAAAGTGCATTTGGAGTATATTCACATGAACAAAGATCATTCCCATCAGTGCGAACATTGCGGGAAGGTTTTCAGCAGTGGAATCCATCTCTTGGAGCATAGTAACACACACAACAGGGTACCGGACAGATTCGTTTGCGACATCTGTCACATGCCCATGAGCACTAGGCGCGGATATCAGAGGCACTTTAAACGGCACTTGAATCCTGACTACGTCCCGAGAGGAGCTAGGAATGCTAAAAACAAGTGCAAATATGAATGTGACTTTTGTGATGAGAAGTTTAATCTTAAGTCGGATCTGAGGAGGCATGTCATGGTCGCGGAGGACGTCGGCCTGCCCCAGGGGCTTTGCAGGGCCTGCTCCGAAGACGCCATAGCCGCCGCACAGTTCAGACagctcagcaccctctccaacCAACACTGGAACCAAGCAGTCAACTCCCTCTCCGCCATACACGACCCCCCCGACGAGAACAGGACGTTCTACGTGTTCTACAACGACGGACAGACTTTCATCAGAGAGGAACCCAGAAAGTCGATCTCCAAAGGCGAGGCCGTCGTCAGACTCAACCAGAAGGTCAAAAGGATCAAAGCTAAGAGGTCTTACACGAAATCAGCCGGGAAGTGCCAGTGTCCCGATTGCGGGAAAGATTTCCCCGTGGCGTACAATTTGAACGTCCATTTGAAGAATACTATGAAGCGAGCGTGCATTCGCTGCGGAATCGTTTTGGAAAGGGAGAGGCTGACTGACCATCTGGCCAAGTTTCATGGGAAACTGTACGTCGACTGCGACATCTGTTTTAAACTGTTCGAACACGAAGATGATTTAAAACAGCACTATTTATCGCACCACAGCAGATTCTCATTCGGCTGTCAGATCTGCGGACGAGGGTACACCAACGACAGAGCGTTACGGGCTCACATGTACGCGCATACTCTATTTCTCTGTATGTCTTGCAATTTGAGCTTCGAGAACCGTCGGTGCTACAAGCATCACCAAAAGAAGTGCAAATCCGCCCAAACTCCTACAGCCACCACCTTCACTTGCGACTATTGCGGGCACGTTTACAACAAAAAGCCTTCCCTCCGCATCCATATAATACAGAAACACTTAAACGTCCTTCCGTACGTCTGTGAGACTTGTGGGAAAAGAACATCCACGCTAGCCCACTTGCGCTCGCACGAGGCTATACACACAACGGAAAGGAAGGTGTATAAATGCGTCTGTGGCGCGGAGATGCGAACTGAACTCGGATACCACTTGCACCAACGCATCCATACCGGTGAGAAACCTTACGAATGTGAGGAGTGTGGTGATAGGTTTCTGTCGGCTTCTCGAAGGTTGGATCACATCAAGAGACGGCACCGCAGCACGAAGGACATGCCGCACGGGTGCGAGATGTGCCACGCGCGGTTCGTGCGCCCGTTCGAGCTGAAGAAGCACTACTCGTCCGTGCACGCCTCGGCGGTGGTCGTGCTGCCCGCCAAGAAGAGGATCCGGCAGCAGATGTGA
- Protein Sequence
- MNRQVDVKALVSHIVRGDGLDKCRICMGDTSEGQVYLGDTVMMDGERPVTLAELLEIITGIEVPLEEALPAGLCTACAHCAMEAASFRTVCRQAMSQWDTTLQLLTNSMPQKHPSAPSMYIVLDKDQVTIVEDLKHLDPAHIAAERLTARIVQQVKQMKAKEALKVVKHKCQCPDCGKKFVYAHELYTHLKESTDFKRACYVCAKIMTRDDLIKHLKSYHKLEPYDCKKCPALLRSRKLLVKHVAEAHGSGACTCGDCGRSFKSAPAFHAHLSVHSVKTCPRCDKVFRNQTCYLYHVKKCCKLETSNITHRTKTGVSIEVKNKKSERKTRVGLRGAADKACICDYCGKKLAGKKYIATHIQIVHMKNTHRPCPYCGKFLASAHMGEHLKKHELETVFTCEYCGIVLKTKLGYVQHIRLHTGEKPYDCQYCGDSFSASSRRSEHIRKVHKTENTVLKYICEFCPARFQLPYKLRNHVSTVHNKEDAAAVPFSCKICMEKFSSCRGLTHHSRKHQKIVETSALLPNRICGGCASAVAPTIRLIEYLRDADRKWRDASDYIEQLHFKDNVKTAYIVVDNNVRDITTYTENVRRSDCPEKIYKSFKKRKNQQNAVRRRNELERKLRDSEISTSLKCPECEKSFLCVYKYNMHMRYYDKRACVHCREMIKVEDLKGHYAEHGVDTMQCNICYETFKKKDAFLKHKVTYHSKGPYFCYICKLSYRDPHHLAAHMTSKHEPRICLACNRKFSNVYCFRTHSRKCKNSQQRGGVFICDICAKVYRSKYALKVHLEYIHMNKDHSHQCEHCGKVFSSGIHLLEHSNTHNRVPDRFVCDICHMPMSTRRGYQRHFKRHLNPDYVPRGARNAKNKCKYECDFCDEKFNLKSDLRRHVMVAEDVGLPQGLCRACSEDAIAAAQFRQLSTLSNQHWNQAVNSLSAIHDPPDENRTFYVFYNDGQTFIREEPRKSISKGEAVVRLNQKVKRIKAKRSYTKSAGKCQCPDCGKDFPVAYNLNVHLKNTMKRACIRCGIVLERERLTDHLAKFHGKLYVDCDICFKLFEHEDDLKQHYLSHHSRFSFGCQICGRGYTNDRALRAHMYAHTLFLCMSCNLSFENRRCYKHHQKKCKSAQTPTATTFTCDYCGHVYNKKPSLRIHIIQKHLNVLPYVCETCGKRTSTLAHLRSHEAIHTTERKVYKCVCGAEMRTELGYHLHQRIHTGEKPYECEECGDRFLSASRRLDHIKRRHRSTKDMPHGCEMCHARFVRPFELKKHYSSVHASAVVVLPAKKRIRQQM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -