Atur052365.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990307.1:138515-168038[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00024 0.027 16.5 2.9 1 23 1352 1375 1352 1375 0.98 2 15 2.4e-05 0.0027 19.7 4.3 1 23 1395 1417 1395 1417 0.97 3 15 0.0011 0.12 14.5 0.6 1 23 1423 1445 1423 1445 0.96 4 15 0.00045 0.051 15.7 4.6 1 23 1453 1475 1453 1475 0.98 5 15 9.6e-05 0.011 17.8 2.1 1 23 1481 1503 1481 1503 0.99 6 15 4.6e-06 0.00052 21.9 2.0 1 23 1509 1531 1509 1531 0.99 7 15 0.00074 0.084 15.0 6.5 1 23 1537 1559 1537 1560 0.95 8 15 0.00024 0.027 16.5 2.9 1 23 1971 1994 1971 1994 0.98 9 15 2.4e-05 0.0027 19.7 4.3 1 23 2014 2036 2014 2036 0.97 10 15 0.0011 0.12 14.5 0.6 1 23 2042 2064 2042 2064 0.96 11 15 0.00045 0.051 15.7 4.6 1 23 2072 2094 2072 2094 0.98 12 15 9.6e-05 0.011 17.8 2.1 1 23 2100 2122 2100 2122 0.99 13 15 4.6e-06 0.00052 21.9 2.0 1 23 2128 2150 2128 2150 0.99 14 15 0.00074 0.084 15.0 6.5 1 23 2156 2178 2156 2179 0.95 15 15 0.026 2.9 10.2 0.7 1 23 2425 2447 2425 2447 0.97
Sequence Information
- Coding Sequence
- ATGGGTAAGGATACCCTGACTCGTATCTGTTGTGATAGTTTCAGTGACAACGAAATAAAGTTAGCCAAAAATTTGCTCTTCGATGCGATCCCAGAAGCAAGAAAAAAGAACAGGAGAAATAAGGGCCAGAACGTGAGAGATATTGACGACATCATTGGATTATTAAGAGTGGCCGATCCGGAGACAGTACCAACGTTCGTTGCTCGGGATTTACAGAAGCTACCGCCGATAACATTCGATCACATAGACGTAACGAAGCTGTTAAAGGACATTCTCATTCTACAAAACGAACTGAAAATAATCAAACGTAACTCTATAGACGTAACTCAATTTGTGGAGTTAAAGAGTGAGGttgaaaacttaaaactaagttCAATTGTTCATAACCCTTATGACTATGTTAGCAGACAAAGGGGTGCCTATTTAATGGTGTCAGATAGCTATGACAGTGGCCCTATGGCTATGCAGACACTACATGCAGAGGATTCCAATAAAACGCAATCTCCAGTAAGCAGAAAACTGGATACAAAAGGAACATCACCGAAATTAGACGGTATGCGGCATATTTCGGTTATTCAAAAGTTAACCGACGGCGAGCAAGAACCAGCTAGCATCCCCGCGTCAGCGCCGCGTACTAGTACCGCTAACTCGCCCGTTAACAAAGGCAACGTTGTACGTATAGTCGACTCGCTTGCACATAGCGACGCTGATATAATCTGTCTTCAAGAAACCTGGTTGTTTCCTCATGACCTGACGTTCCTACGTGAAATACACCCCGATTTTGAGTACACGGGAAAGTCGGCGGTGGACACGGCGGCGGGCCTCATCAAAGGCCGTCCATTTGGAGGTTTGGCAGTATTGCATCGTAGAAATCTTTTCGAGTCGGTGTCTATCATTGAGTGCAAAAGTGTTCGTATCGCGGCTATAAAAATCACCCTTAAAAATCGGTCATTTATTGTGTGTAGTGTTTATATGCCTACCGACGCAGCGGACAATCTGCCGGAGTACATAGACTGCCTCGTGCAAACACATTATCAGGCAGGTGGCCGTAATAGGAAGGACAAACGTGTCGTGGGCTGGAATAAACATGTCCAGGACGCTCACGGGCAGGCCAGGATGCGCTTCCAGGAGTGGGTCAATTTTAATAAGCCTATGTCGGGAGTCATTTACGAAAATATGTGCTCAAGTCGGAAATTATTCAAAAGCAAGTTGAAATTGTGCCAAAATCATCAAGAGCAAATAAGACTTGATATTTTGGCATCACATCATAGCTCCAAAGACTTTAAGCAATTATGGAAGGCAGTTAAGAAACTCGATGGGCAGCCTGGCGTCCCCGTGAGCGTCGGAGATGTGAGTGAGCCGGAATCTATAGCAAATATGTTTGTCAGTCATTTCAAAATAGAATCTCCGCTTGGCTCTGCGCAGCAAGGGGTTGATGACGGGGCCTgtagtgagtcggactttgttcGTTTTACCTCTGAACAGGTCAAACACGTAATCTCGAAAATGACCAAAGGGAAGTCACCGGGTCACGATGGGCTCAGTATAGAACATTTGCAGTTTGCGGGAAAACAGTTAAATACAGTCCTGGCTAAGTTCTATTCTTTGTGCATGTCTCACTCCTACCTTCCGTACGACTTAATGAGAACTATTATTGTGCCTATTCTCAAGGATAAAACGGGTGATGTTTCTAGCAAATGTAATTATCGCCCCATCTCACTTGCTACTGTGCTGGCTAAGGTGCTGGATAGGTTggagtgcggggtgaggcagcGGGGGGTAACCTCCCCCAAGCTCTTCAACCTGTACGTTAACGACCTGATCGAGGGATTGAGCCGCACTCCAGTAGGCTGCAGAGTTGATGACGTTAGTATAAACAACATCAGCTATGCAGACGACATGGTTCTGCTCACTCCAACGGTCAGGGCGTTAAGAAAACTACTGAGCATATGTGAGGAGTACGTAAACAAGCACGGTTTACTGTACAACGCTAAGAAAAGCGAATACTTGGTATTTAAGGCCGTCGGAGGCGAGCTACCGGAAAGTGTACCTTCCATAAAGCTTAATAACAACGAGCTCAAACGCGTGTATAAATTTAAGTACCTTGGACACTATCTCACCGACGACCTTAAAGACCAATTAGATATAGAAAGGGAGCGCAGGGCACTGGCGGTCCGATGTAACATGTTGAAGACCATCAGTTccctgcgcgtccaatacaacAACGGCTTCAGGATGTTGTTGGGGTTGCCGCGATTCTGCAGCGCATCCGGCATGTTTGCGGAAGCCCGCACCGACGATTATTACGCAATAATGCGGAAAAAAATTGCATCGTTGATGTTCAGAGTGCGCGCCAGCTCCAACCCCATCCTGACTACTGTAGCGAGCCGCAATAATAATGTCCAGAACCCAGATTTAAAGTTCTTTAGTATCAGAAAAGAACTGAAGGACAAGTGGTGCCAGAGTGTGGGCAGGACATCTCCACGAAGCGTATTGTATACTTGCGAACACCACATCGACATAATCATGAAACAGAAGGTAGCGCCGTATCGACAGTATCATGATAAAAACGCAAAGCGCCGCGAGCGCCCAACTGTATGGATCGAAAGTTTCAAAGTAAATTCAGTTCcgtatttttacattttaaatgaaaaGCCTCCGTGGAAAGAGGCACCAACCTGTTCAATGCTTAATCAGAAGAAATACTTTCCAAATATGGCGGCAGTACGTGGGAATGATCCCTTGAGGATAGAGACAATATCAACCTCTTCCGTGGCTGCGAACACTGCGGAGGAAGAATCCACAAGGAAGAAGCCCCTGGAGGCGGCTAAGGCGACGGCCACGGTAACATACACTCGCAAGAAGAAGTTGTCAAGGAAATCAACGGTGAGCAATAAAGATCGCCTTTGGAGAGAAACAGTGGCAACCTGTTCCATGGTAGTCAACCCTAGGGGGCAGGGGCGTGGCGAGGAGAGGGAGGGTGTGGATGAGGAAGAAGATTGCGCAAATGATGTAGTGCGCTCGATAGAAGAACCTTTGTTGAAGGAGACAGTGTCAAGCTGTTACGTGGCAGCACAAACACGGGAAGAGGAAGAGTGTTCAAGAGCGGAGGTTATACACGTAAAAGATGAACCTCTGTGGAAGGAGACAGAGGCGATCAGCTCCATGGTAAGGCACACTCAGGCAGGAGAATGCTTTAGAGACGCGACAGTTTGCGAAAAGGATCACTTGTGGACGTCAGAAGTAACTCAAGAAAAAGAGTGCCCAAGCGAGGATGTAGTGCGCGTAAAGGACGAACCTTTGTGGGATGACAAAATTTCAACCCATTCCAACGAAGAAAAGTGCTTACAGGAAGAATCCATGTTGGAGGAGATAGAGGCAACTAGTTTTATGGAAGCATGTCCTCTGAATGAAGACACCCCATGTTCAATAGTAGCGTTTACTCACCTTAAGGTTGAGGAAGAGAGTGCAAGGGATGTTGATGTGCGCGTTAAAATAGAGCCTTTGCTGGAGGAGGCAGCATCTACTTGTTCCAGTGCAACGCATACTCAGGAGACAGTGTCAGCCTGTTCCCCGATACAAACTCAAAGGAAAAATAGGTCAAAGCCGGGTGTAGGCGTGAAAGAGGAACCTCTATGGAACAACTGTTCCATGATAGCGACTGCACATGTTCAGGGGGGAAGTGAATCTATGCAGGAAGAGTTGGCAACATGTTCCATGACAGGTACTGAGTCACGCGGCgcgagcgcggcggcggcgcgcgccggcCTGTACGCCGGCCACGCCGTCAAGGACGAGCTCGTCGTCGGCCCCGAGTGTCTGCACAAGCCCATGGCGATATTCACAAGAGATGCACTGATCCGGCGCGTGCGCAGCGCGCAGCACGACCACTCGTACGCGGCGCCGGAGCGACGCCCGGCGACAGGCAAGTTTACTAAAAAGCTGAAGCTCTTGGCGAGCGGGATGAAGGAGTGCTACGTCCGGCTCGAGCGCTGCGACGGACGCACGCGCCTGACGCTTACCACCGAACCTCCCCCTCAAGAGAAACACATTTACGAGTGTGATTCATGCGGCAACACATATAAACATAAGAGAAATTTAGTCGATCATATGAGAAAAACGCACTTGAAATCACACGTTCCAAAATCTAAGCGAGAGcaacaacacaaaaaagaaaATTCATTCTCGTGCCAAACGTGTCGCAAGACGTTTACCCGAAAGAGCTATTTGAGGAGACATACTCTTGTCCACGCGGGCGTAAAATCTCACATTTGCCAAATATGCGACAAGGGGTTCGACGTATTGCGCGATCTGAAGAAACACGAACGAGCTCACAGCATTGAAAGAGAAAAAAGTTTCCCCTGTAATGTTTGTCATGCAAAATTTTCACAACGCTGCAATTTGAAGGCACATAAACGAATTCATATGAATTTAAAACCATTTACTTGTGAAGTATGTAATAATAGGTTTACGGAATTGAGTACTTTAAATAGACACAGACGTACACATACAAGGGAGAAACCATATCGCTGCACGATTTGTCAAAAGCGGTTTACATACGCTTACTCCTTGCAGGTGCACCGACGTATTCACAGCGGAGAAAAGCCTTATAGATGTGACATGTGTACGAAACGGTTTAGTCGGAGAGACACTCTACTGCGCCATCATGTACGACATCACACGGTCAAGCGACCCGTGACAGGTACCCGGGGGGTAAAGAGGTCAAAAAAAGAAGCGAAGGTACAACCAACCCCGACTGTTGAGGACGAGGGTTCAAGGGAGGTTGTCGTGCGCGTTAAAATAGAGCCTTTGTTGGAGGAGGCAGCGTCAACTTTTTCCAGTGCAACGCATACTCATACAGAAGTGCGCTCAAACACCTTGCTGATGGAGACAGTGTCAGCCTGTTCCCCGGTACAAACTCACAGGGGAAAAAGCTCAATGCAGGATGTAGGCGTGAAAGAGGAACCTCTATGGAACAACTGTTCCATGACAGCGACTGCACATATTCAGGAGGGAAGTGAATCTATGCAGGAAGAGTTGGCAACAAGTTCCATGACAGGTACTCAGGGGGAAGCGAGGTCAAGGAGAGAGGCTGTGCACGTGAAGTTCCAACCAGTGTTAGCTAAGAGTGTATCGACCGATAAAACGACACAGTACCCTCGGGAAGAAGGATTGTTGAAGACATTGCTCATGCAAGCTTCGCCCCTGTACGCCGGCCACGCCGTCAAGGACGAGCTCGTCGTCGGCCCCGAGTGTCTGCACAAGCCCGAGGCGATGCTCACAAGAGCCCAGCAGAGTGTATCGACGACACAGTGCCCTCGGGAAGAAGGATTGTTAAAAACATTGCTTATGCAAGCCTCGCCCCCGTGCCATGACCGCGGTCAGACGTGGGGCGtgagcgcggcggcggcgcgcgccggcCTGTACGCCGGCCACGCCGTCAAGGACGAGCTCGTCGTCGGCCCCGAGTGTCTGCACAAGCCCGAGGCGATGTTCACAAGAGCCCAGCAGAGTGTATCGACGACACAGTGCCCTCGGGAAGAAGGATTGTTAAAAACATTGCTTATGCAAGCCTCGCCCCCGTGCCATGACCGCGGTCAGACGTGGGGCGtgagcgcggcggcggcgcgcgccggcCTGTACGCCGGCCACGCCGTCAAGGACGAGCTCGTCGTCGGCCCCGAGTGTCTGCACAAGCCCGAGGCGATGTTCACAAGAGATGCACTGATGCGGCGCGTGCGCAGCGCGCAGCACGACCACGCGTACGCGGCGCCGGAGCGGCCCGCGGCGACAGAAAAGCTGAAGCTCTTGGCGAGCGGGATGAAGGAGTGCTACGTCCGGCTCGAGCGCTGCGACGGACGCACGCGCCTGACGCTTACCACCGAACCTCCCCCTCAAGAGAAACACATTTACGAGTGTGATTCATGCGGCAACACATATAAACATAAGAGAAATTTAGTCGATCATATGAGAAAAACGCACTTGAAATCACACGTTCCAAAATCTAAGCGAGAGcaacaacacaaaaaagaaaATTCATTCTCGTGCCAAACGTGTCGCAAGACGTTTACCCGAAAGAGCTATTTGAGGAGACATACTCTTGTCCACGCGGGCGTAAAATCTCACATTTGCCAAATATGCGACAAGGGGTTCGACGTATTGCGCGATCTGAAGAAACACGAACGAGCTCACAGCATTGAAAGAGAAAAAAGTTTCCCCTGTAATGTTTGTCATGCAAAATTTTCACAACGCTGCAATTTGAAGGCACATAAACGAATTCATATGAATTTAAAACCATTTACTTGTGAAGTATGTAATAATAGGTTTACGGAATTGAGTACTTTAAATAGACACAGACGTACACATACAAGGGAGAAACCATATCGCTGCACGATTTGTCAAAAGCGGTTTACATACGCTTACTCCTTGCAGGTGCACCGACGTATTCACAGCGGAGAAAAGCCTTATAGATGTGACATGTGTACGAAACGGTTTAGTCGGAGAGACACTCTACTGCGCCATCATGTACGACATCACACGGTCAAGCGACCCGTGACAGGTACCCGGGGGGTAAAGAGGTCAAAAAAAGAAGCGAAGGTACAACCAACCCCGACTGTTGAGGACGAGGGTTCAAGGGAGGTTGTCGTGCGCGTTAAAATAGAGCCTTTGTTGGAGGAGGCAGCGTCAACTTTTTCCAGTGCAACGCATACTCATACAGAAGTGCGCTCAAACACCTTGCTGATGGAGACAGTGTCAGCCTGTTCCCCGGTACAAACTCACAGGGGAAAAAGCTCAATGCAGGATGTAGGCGTGAAAGAGGAACCTCTATGGAACAACTGTTCCATGACAGCGACTGCACATATTCAGGAGGGAAGTGAATCTATGCAGGAAGAGTTGGCAACAAGTTCCATGACAGGTACTCAGGGGGAAGCGAGGTCAAGGAGAGAGGCTGTGCACGTGAAGTTCCAACCAGTGTTAGCTAAGAGTGTATCGACCGATAAAACGACACAGTACCCTCGGGAAGAAGGATTGTTGAAGACATTGCTCATGCAAGCTTCGCCCCTGTACGCCGGCCACGCCGTCAAGGACGAGCTCGTCGTCGGCCCCGAGTGTCTGCACAAGCCCGAGGCGATGCTCACAAGAGAAGAGCTGACCGTCTCGGCGAGCGGAATGAAAGACGCGCCGCTCGAGCGACGCGACGGACGCAAGCACCAGACGGTCGACAATGAACCTCCCCGTCAGAAGCACAACATTTACGACGGAGAAAAACCTTACAGTTGTGACATATGCATGGAACAGTTTAGTCGGAAAGACACGTTGCTGTACCATGTGCTGTATCACGCGGGCAAAGGGCCCTTGGCGAAGGCGAAGAAAAGATCTCGTCAGAGTTTTAGTTGA
- Protein Sequence
- MGKDTLTRICCDSFSDNEIKLAKNLLFDAIPEARKKNRRNKGQNVRDIDDIIGLLRVADPETVPTFVARDLQKLPPITFDHIDVTKLLKDILILQNELKIIKRNSIDVTQFVELKSEVENLKLSSIVHNPYDYVSRQRGAYLMVSDSYDSGPMAMQTLHAEDSNKTQSPVSRKLDTKGTSPKLDGMRHISVIQKLTDGEQEPASIPASAPRTSTANSPVNKGNVVRIVDSLAHSDADIICLQETWLFPHDLTFLREIHPDFEYTGKSAVDTAAGLIKGRPFGGLAVLHRRNLFESVSIIECKSVRIAAIKITLKNRSFIVCSVYMPTDAADNLPEYIDCLVQTHYQAGGRNRKDKRVVGWNKHVQDAHGQARMRFQEWVNFNKPMSGVIYENMCSSRKLFKSKLKLCQNHQEQIRLDILASHHSSKDFKQLWKAVKKLDGQPGVPVSVGDVSEPESIANMFVSHFKIESPLGSAQQGVDDGACSESDFVRFTSEQVKHVISKMTKGKSPGHDGLSIEHLQFAGKQLNTVLAKFYSLCMSHSYLPYDLMRTIIVPILKDKTGDVSSKCNYRPISLATVLAKVLDRLECGVRQRGVTSPKLFNLYVNDLIEGLSRTPVGCRVDDVSINNISYADDMVLLTPTVRALRKLLSICEEYVNKHGLLYNAKKSEYLVFKAVGGELPESVPSIKLNNNELKRVYKFKYLGHYLTDDLKDQLDIERERRALAVRCNMLKTISSLRVQYNNGFRMLLGLPRFCSASGMFAEARTDDYYAIMRKKIASLMFRVRASSNPILTTVASRNNNVQNPDLKFFSIRKELKDKWCQSVGRTSPRSVLYTCEHHIDIIMKQKVAPYRQYHDKNAKRRERPTVWIESFKVNSVPYFYILNEKPPWKEAPTCSMLNQKKYFPNMAAVRGNDPLRIETISTSSVAANTAEEESTRKKPLEAAKATATVTYTRKKKLSRKSTVSNKDRLWRETVATCSMVVNPRGQGRGEEREGVDEEEDCANDVVRSIEEPLLKETVSSCYVAAQTREEEECSRAEVIHVKDEPLWKETEAISSMVRHTQAGECFRDATVCEKDHLWTSEVTQEKECPSEDVVRVKDEPLWDDKISTHSNEEKCLQEESMLEEIEATSFMEACPLNEDTPCSIVAFTHLKVEEESARDVDVRVKIEPLLEEAASTCSSATHTQETVSACSPIQTQRKNRSKPGVGVKEEPLWNNCSMIATAHVQGGSESMQEELATCSMTGTESRGASAAAARAGLYAGHAVKDELVVGPECLHKPMAIFTRDALIRRVRSAQHDHSYAAPERRPATGKFTKKLKLLASGMKECYVRLERCDGRTRLTLTTEPPPQEKHIYECDSCGNTYKHKRNLVDHMRKTHLKSHVPKSKREQQHKKENSFSCQTCRKTFTRKSYLRRHTLVHAGVKSHICQICDKGFDVLRDLKKHERAHSIEREKSFPCNVCHAKFSQRCNLKAHKRIHMNLKPFTCEVCNNRFTELSTLNRHRRTHTREKPYRCTICQKRFTYAYSLQVHRRIHSGEKPYRCDMCTKRFSRRDTLLRHHVRHHTVKRPVTGTRGVKRSKKEAKVQPTPTVEDEGSREVVVRVKIEPLLEEAASTFSSATHTHTEVRSNTLLMETVSACSPVQTHRGKSSMQDVGVKEEPLWNNCSMTATAHIQEGSESMQEELATSSMTGTQGEARSRREAVHVKFQPVLAKSVSTDKTTQYPREEGLLKTLLMQASPLYAGHAVKDELVVGPECLHKPEAMLTRAQQSVSTTQCPREEGLLKTLLMQASPPCHDRGQTWGVSAAAARAGLYAGHAVKDELVVGPECLHKPEAMFTRAQQSVSTTQCPREEGLLKTLLMQASPPCHDRGQTWGVSAAAARAGLYAGHAVKDELVVGPECLHKPEAMFTRDALMRRVRSAQHDHAYAAPERPAATEKLKLLASGMKECYVRLERCDGRTRLTLTTEPPPQEKHIYECDSCGNTYKHKRNLVDHMRKTHLKSHVPKSKREQQHKKENSFSCQTCRKTFTRKSYLRRHTLVHAGVKSHICQICDKGFDVLRDLKKHERAHSIEREKSFPCNVCHAKFSQRCNLKAHKRIHMNLKPFTCEVCNNRFTELSTLNRHRRTHTREKPYRCTICQKRFTYAYSLQVHRRIHSGEKPYRCDMCTKRFSRRDTLLRHHVRHHTVKRPVTGTRGVKRSKKEAKVQPTPTVEDEGSREVVVRVKIEPLLEEAASTFSSATHTHTEVRSNTLLMETVSACSPVQTHRGKSSMQDVGVKEEPLWNNCSMTATAHIQEGSESMQEELATSSMTGTQGEARSRREAVHVKFQPVLAKSVSTDKTTQYPREEGLLKTLLMQASPLYAGHAVKDELVVGPECLHKPEAMLTREELTVSASGMKDAPLERRDGRKHQTVDNEPPRQKHNIYDGEKPYSCDICMEQFSRKDTLLYHVLYHAGKGPLAKAKKRSRQSFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -