Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990306.1:8603701-8610196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.16 19 7.6 0.2 1 23 114 137 114 137 0.94

2 15 0.00016 0.018 17.1 3.9 1 23 230 252 230 252 0.98

3 15 0.0059 0.67 12.2 5.0 1 21 262 282 262 284 0.96

4 15 0.00069 0.078 15.1 3.9 1 23 292 315 292 315 0.97

5 15 0.00036 0.041 16.0 0.6 1 23 321 343 321 343 0.95

6 15 1.5e-05 0.0017 20.3 3.8 1 23 349 371 349 371 0.98

7 15 5.3e-07 5.9e-05 24.9 1.1 1 23 377 399 377 399 0.96

8 15 4.5e-05 0.005 18.8 2.4 1 23 405 427 405 427 0.97

9 15 2.1e-06 0.00024 23.0 0.5 1 23 433 455 433 455 0.98

10 15 0.00027 0.031 16.4 1.4 1 23 461 483 461 483 0.98

11 15 8.1e-06 0.00092 21.2 0.5 1 21 489 509 489 510 0.96

12 15 0.0014 0.16 14.1 0.7 1 21 534 554 534 555 0.94

13 15 0.00072 0.081 15.0 0.6 1 21 579 599 579 600 0.95

14 15 0.00023 0.025 16.6 1.7 1 23 624 646 624 646 0.98

15 15 0.00024 0.027 16.5 0.7 1 23 652 674 652 674 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.16	19	7.6	0.2	1	23	114	137	114	137	0.94
2	15	0.00016	0.018	17.1	3.9	1	23	230	252	230	252	0.98
3	15	0.0059	0.67	12.2	5.0	1	21	262	282	262	284	0.96
4	15	0.00069	0.078	15.1	3.9	1	23	292	315	292	315	0.97
5	15	0.00036	0.041	16.0	0.6	1	23	321	343	321	343	0.95
6	15	1.5e-05	0.0017	20.3	3.8	1	23	349	371	349	371	0.98
7	15	5.3e-07	5.9e-05	24.9	1.1	1	23	377	399	377	399	0.96
8	15	4.5e-05	0.005	18.8	2.4	1	23	405	427	405	427	0.97
9	15	2.1e-06	0.00024	23.0	0.5	1	23	433	455	433	455	0.98
10	15	0.00027	0.031	16.4	1.4	1	23	461	483	461	483	0.98
11	15	8.1e-06	0.00092	21.2	0.5	1	21	489	509	489	510	0.96
12	15	0.0014	0.16	14.1	0.7	1	21	534	554	534	555	0.94
13	15	0.00072	0.081	15.0	0.6	1	21	579	599	579	600	0.95
14	15	0.00023	0.025	16.6	1.7	1	23	624	646	624	646	0.98
15	15	0.00024	0.027	16.5	0.7	1	23	652	674	652	674	0.98

Sequence Information

Coding Sequence: ATGGAGGATAATAAATTAGACGCCAATACTATATGTAGAACGTGCATGTGTGAAGGGACAAATATGAAATCGGTGTTCCACAAAGAAAATGACGAGAAAACTGTGACTGAATTACTCGAATTCATAATAAACATTAGCATTAATAGTGATGATAGCCTTCCTAAACAAATTTGCAATGAATGCGAGACGTTTTTACACAAAGCTGATCATTTTAAGCGACGCTGTTTAGATGTTGAACTCAAGTTCAAGGAACTTTTTAGGGACAACATTCCTACAACATTTTCTACTATAAAACATGAGGATAATGCAAGAGGACCCATTACGGACGCTGCAGAACCGTACCAGTGTTCTATTTGTTCTAGTAAatacgctgaaataactttattaGAAAATCATATTTTAGATTTTCATAAATTGAAAAAAGTGCCATTATTTAATGAACTAAATCTATTTTCCAACGCCAAAGCCGAAGTAATTACTTTAGAAACTATCCCAGAGAAAGAAGAAAAGGTGATCAAAATAGTTAAACAGGAATTTATTGATGATTTTGACAATTATAGTAATTTTGAAACAGAACCCGAACAAATCGATTTTGAACTGAATGAAGATAAAAGCATCATTAATCAGCCTCAAGCAATTgaagaaatagataaaaaaaccATAGACagtttattaaaagacaaaaagcACAAATGCGAGAAATGCAATCAAGAATTTAAATCAGCAAATTCTCTTAACATACATAAAAGGAAACACGAAGATAAAAAACCGAACGGAAGAATCTATCAATGTTCTTTTTGTTCACGAAAATTTATGAGCAGATCAGGCTTGACAAACCATTTACGATGCCACGAAAAAAAAGAAGACGTGAAATACACTTGCGGTAGTTGTAAAAGGGAATTTAAACATAAAGCGCATTTAGATAATCATATGGTAACTCTGCATGCAAACGAAAAAGGTTATAGTTGTGATTTCTGTTCTAAGAACTTTGCGACGCAAGAAAGCTTGGAGATTCACAAGGATTTGCACAAAATAGATAAGAAGCATACATGCCGATATTGTGATAAGTCTTTCTACATGTTGTCAACTTTAACTGATCACATTAGAACGCACACAGGCGAGAAGCCCTACCTCTGTTCCACCTGCGGGCGCGGTTTCAGCCAGAAGACAAACCTGGCGCAGCACATGCGCCGCCATCTTGGATTGAAGCCGTTTGCATGTGACCACTGCGACCACAGGTTCGTGTCAAAAGGCGAGTTAGTGGCCCATACCCGTAAGCACAGCGGCGCACACCCCTTCATATGCGACGAGTGTGGGAGCGGGTTCACCACATCTTCATCCTTGGTTAAACACAGACGGACCCACAGTGGGGAGAGACCTTATGCCTGCGATCTGTGTCACAtgagGTTCGCAGCATCAGGCACCCTGAAGAATCACCGGCGCACGCACACCGGCGAGAAGCCCTACCAGTGCTCGCACTGCGACAAGGCGTTCGTGCAGAAGAACGACCTCGTCTCGCACGTCAGGTCAGTTCAGGCTTGGGGCAAGTCGGGGTACGATAATATACAACAGGTTCGCAGCATCAGGCAGTTGAAGAACCACCAGTGCTCGCACTGCGACAAGGCGTTAGTGCAGAAGAACGACCTCGTCTCCCACGTCAAGTCAGTTCAGGCTTGGGGCAAGTCGGGGTACGATAATATACAACAGGTTCGCAGCATCAGGCAGTTGAAGAACCACCAGTGCTCGCACTGCGACAAGGCGTTAGTGCAGAAGAACGACCTCGTCTCCCACGTCAGGTCAGTTCAGGCTTGGGGCAAGTCGGGGTACGATAATATACAACAGGTTCGCAGCATCAGGCAGTCGAAGAACCACCAGTGCTCGCACTGCGACAAGGCGTTAGTGCAGAAGAACGACCTCGTCTCCCACGTCAGATGGCACACAGGAGAACGACCATACACCTGCGCTGTCTGCGGTAGTTCCTTCCACAAGCCCTCAGCACTAAGGAGCCACGCCAAAATGCACACCAGGGACAAAGAACAGCTGATGCACACGAGGGACAACAAAGAACAGTTGATGCACGCCAGGGACAGCAAAGACCAACAACTCATACCCTACTGA
Protein Sequence: MEDNKLDANTICRTCMCEGTNMKSVFHKENDEKTVTELLEFIINISINSDDSLPKQICNECETFLHKADHFKRRCLDVELKFKELFRDNIPTTFSTIKHEDNARGPITDAAEPYQCSICSSKYAEITLLENHILDFHKLKKVPLFNELNLFSNAKAEVITLETIPEKEEKVIKIVKQEFIDDFDNYSNFETEPEQIDFELNEDKSIINQPQAIEEIDKKTIDSLLKDKKHKCEKCNQEFKSANSLNIHKRKHEDKKPNGRIYQCSFCSRKFMSRSGLTNHLRCHEKKEDVKYTCGSCKREFKHKAHLDNHMVTLHANEKGYSCDFCSKNFATQESLEIHKDLHKIDKKHTCRYCDKSFYMLSTLTDHIRTHTGEKPYLCSTCGRGFSQKTNLAQHMRRHLGLKPFACDHCDHRFVSKGELVAHTRKHSGAHPFICDECGSGFTTSSSLVKHRRTHSGERPYACDLCHMRFAASGTLKNHRRTHTGEKPYQCSHCDKAFVQKNDLVSHVRSVQAWGKSGYDNIQQVRSIRQLKNHQCSHCDKALVQKNDLVSHVKSVQAWGKSGYDNIQQVRSIRQLKNHQCSHCDKALVQKNDLVSHVRSVQAWGKSGYDNIQQVRSIRQSKNHQCSHCDKALVQKNDLVSHVRWHTGERPYTCAVCGSSFHKPSALRSHAKMHTRDKEQLMHTRDNKEQLMHARDSKDQQLIPY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -