Atur047826.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:8837846-8863301[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0036 0.41 12.8 2.7 1 23 464 487 464 487 0.96 2 14 0.00014 0.015 17.3 1.2 1 23 496 518 496 518 0.97 3 14 0.0004 0.045 15.8 0.6 1 23 537 559 537 559 0.98 4 14 3.5e-05 0.004 19.2 0.3 1 23 565 587 565 587 0.98 5 14 2.9e-06 0.00032 22.6 0.6 1 23 593 615 593 615 0.97 6 14 0.0037 0.42 12.8 2.1 1 23 621 643 621 643 0.95 7 14 0.00025 0.029 16.5 1.4 1 23 649 671 649 671 0.98 8 14 0.00058 0.066 15.3 4.1 1 23 677 699 677 699 0.98 9 14 6e-05 0.0068 18.4 1.1 1 23 703 725 703 725 0.96 10 14 2.6e-07 2.9e-05 25.9 2.7 1 23 731 753 731 753 0.98 11 14 1.6e-05 0.0018 20.3 5.5 1 23 759 781 759 781 0.98 12 14 1e-05 0.0011 20.9 2.3 2 23 789 810 788 810 0.97 13 14 0.00044 0.05 15.7 0.5 1 23 816 839 816 839 0.92 14 14 1.8e-05 0.002 20.1 2.7 2 23 846 868 845 868 0.96
Sequence Information
- Coding Sequence
- ATGGGGACCCCCTTATTAGGAAGGCGGCCGACTACCTTCCTCGAGCTCCCGATCCCTCTGTGGATCCAATCCACCTCACAGATTGCTGATGCAGACATCGGTTTACCCGACGTCCGAAGCGTGTACTATCTGACCTTGGTTTGTCGCCGCGGACTCTTCGAACGTCATTACGATTATGATCTGCTTTGGCAAAAATTAAGTGAGACGGGCATACCGGCGGAGTGCGTGAGTCTATTTAGGCACTGGTACAGCAATCAGTTAAACCAGGTTAGATGGGCGAGCAGTTTTTCCAATGAGTACAGGCTTGAATGCGGTGTAAGACAGGGCGGTATCACCTCACCGAAGCTCTTTAACCTGTACATCAACAAGCTGATAGAGGGGCTCAGTGGTATGCATGCGGGATGTTATGTGGGTAGCACGTGTGTCAACAGCCTAAGCTATGCCGATGACATGGTGCTACTGAGCCCGTCTGTCAGCGCGCTGGAGCAGCTGCTTGCCTGTTGCGAGTCCTATGCCTTGGCCCATGGACTGGAGTACAACAATAAAAAGAGTGAAGTGCTGATATTTAAGGCAGGTAAAATTAAGCCATACTATGTACCACCTATCTTGTTGAACTCTAGCCCATTACCTGTAGTAGATAAGGTCAAGTACCTAGGACACATCCTCACGAGTGACCTAAAAGATGATTTGGATGTAGAAAGAGAGCGCAGGGCGTTGGCGGTTCGGAGTAACATGATTAcccgcaggtttgctcgttGCTCACGTGATGTAAAAATCACATTGTTTAAATCGTACTGCCAATCTTTGTACACGAGCATCCTGTGGGTCCGGTACACGAAACGAGCCTACAACGCCTTGCGCGTACAATACAACAATGCTTTTAGAATGCTGATGGGACTACCTAGCAGGTGCTCTGCATCGGGCATGTTTGTGGAAGCTCGCACGGATAGTTTTCAGGCTATAATTCGTAAAAATATAGTCTCATTACTAAGTCGTGTGAGATGtagtcccaacagcattctaaagGAAATTGCTGAGAGAATGTTCTTCTCATTCATGCAGCTGACGCTAGACAATGAAGATGAGCGTGGGATCTGTGAGGTGTGCGTCGGCCGCCTGCAGGACGCAAGTGACTTCAGGCTGCAAGTGCAGCGCAGCCAGGCGGCGTTGCGGGCGCGGCTGGCGAGAAGGCTTGCCAAAGATGGTGGTCCTCTAATAAAGAAAGAGTTGGGAGACAACAGCGTAACGATTAAAGAAGAGGTTTTAATACCTACATCGACGTGTGATCCATCGCCGGACCTCCACAAGCCGGGCTGGTCTGTGTCTGTCTGCGACAGAGATCAGCTAGAATCCTACGTGAAGATCGAACGCTTTAGCGACGACGAGTCACACACTTGCCGCACTTGCCATGACACATTCGTCAACGAATCCAGCCTCGCGACCCACATGAGAGAGGTACACGATCACTTATGGGTTCCAGCCGTTTTTATATGCGACAATTGCGGAGAACAATTCAATAAGAAGCATGATTTGATCCAGCATCTACAAGAACACGCGACCGATCCATTCTACCCACATAAGATAGGTTTAGTCAGTGATCAAAAGCCGTTTAGTTGTGGGGTTTGTAAGAAAGGATTCGCCAACAGCTGGGATTTTAGTGAACACAAACGGAGTCATACCCGTGAGAAGCATTTTAGTTGCGAAATATGTAATAAGCAGTTTGCGCGTATAGGCGTTTTGAACGATCACATGAGACGACACACAGGAGATAAACCGTTTGCTTGTAATATGTGTGAAAAAAGTTTCACACAGAAAGCCCCCTTGAGAAAACATATGTCCGTCCACACGGGACAAAAGCCTTACGTGTGTACATACTGTAATAAACGATTTAGACTGAAAGCTGCGCTTACATTTCACACGAAATTACACACAGGAGAGAGATGCTTTAGCTGTGAGTTGTGTGATAAGAAATTCATATCGAAACGCCGTCTCGAAGAACACTTTAGAATACACACCGGAGAGCGACCTTTTAGTTGTGACTCGTGTGACAAGCAATATACAACTCAACACCAGTTAAACCTACATAAGAGACTACACACAGGTTGTTTTAGCTGCGAGACATGTAACAAGCAATTCCCAACGAAATCGAAACTAAAGATACACGTCGTATCGCACACGGGCGAAAAGAATCACAAATGTGACATATGCAACAAGGTATTTACATCAAAGTACCAACTGACAGCCCACACTAGAGTGCACACCGGGGAGTATCCGTTCAGCTGTGAAATATGCGACAAGAAATTCACccaaaaacattacatgaaAAACCACATGAAACAGCATACCGGACTGAAATCTTTCGTCACTTGTGACATTTGTAAGAAGCAATTCACATCGAAATGCAATCTAAAAGTCCACATGATCATACACACTGGTGAGAAACCGTATAAGTGTGAAATCTGTAGCAAGGAGTTTTCGCTAAAGACTAGCTGGAGGCGACACACGGCTGCGGTGCACGGGGAGAAGAAACCGCAGAGCTGTGCTATCTGCAACAAGCAGTTTAATCAGGAAATGCACTTGAAAAGACACATGCGTCGAGTACATAAGGTAAAACAACAATAA
- Protein Sequence
- MGTPLLGRRPTTFLELPIPLWIQSTSQIADADIGLPDVRSVYYLTLVCRRGLFERHYDYDLLWQKLSETGIPAECVSLFRHWYSNQLNQVRWASSFSNEYRLECGVRQGGITSPKLFNLYINKLIEGLSGMHAGCYVGSTCVNSLSYADDMVLLSPSVSALEQLLACCESYALAHGLEYNNKKSEVLIFKAGKIKPYYVPPILLNSSPLPVVDKVKYLGHILTSDLKDDLDVERERRALAVRSNMITRRFARCSRDVKITLFKSYCQSLYTSILWVRYTKRAYNALRVQYNNAFRMLMGLPSRCSASGMFVEARTDSFQAIIRKNIVSLLSRVRCSPNSILKEIAERMFFSFMQLTLDNEDERGICEVCVGRLQDASDFRLQVQRSQAALRARLARRLAKDGGPLIKKELGDNSVTIKEEVLIPTSTCDPSPDLHKPGWSVSVCDRDQLESYVKIERFSDDESHTCRTCHDTFVNESSLATHMREVHDHLWVPAVFICDNCGEQFNKKHDLIQHLQEHATDPFYPHKIGLVSDQKPFSCGVCKKGFANSWDFSEHKRSHTREKHFSCEICNKQFARIGVLNDHMRRHTGDKPFACNMCEKSFTQKAPLRKHMSVHTGQKPYVCTYCNKRFRLKAALTFHTKLHTGERCFSCELCDKKFISKRRLEEHFRIHTGERPFSCDSCDKQYTTQHQLNLHKRLHTGCFSCETCNKQFPTKSKLKIHVVSHTGEKNHKCDICNKVFTSKYQLTAHTRVHTGEYPFSCEICDKKFTQKHYMKNHMKQHTGLKSFVTCDICKKQFTSKCNLKVHMIIHTGEKPYKCEICSKEFSLKTSWRRHTAAVHGEKKPQSCAICNKQFNQEMHLKRHMRRVHKVKQQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -