Atur019093.2
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990287.1:4123883-4150007[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-05 0.0014 20.6 2.3 1 23 76 98 76 98 0.98 2 17 2.5e-05 0.0028 19.7 0.8 1 23 104 126 104 126 0.96 3 17 0.0006 0.068 15.3 4.2 1 23 132 154 132 154 0.97 4 17 0.0006 0.068 15.3 4.2 1 23 202 224 202 224 0.97 5 17 0.0006 0.068 15.3 4.2 1 23 272 294 272 294 0.97 6 17 0.00052 0.059 15.5 3.7 1 23 342 364 342 364 0.97 7 17 1.6e-06 0.00018 23.4 0.4 1 23 370 392 370 392 0.98 8 17 0.0046 0.52 12.5 3.3 1 23 398 420 398 420 0.98 9 17 0.99 1.1e+02 5.2 0.6 3 10 430 437 428 449 0.85 10 17 0.0037 0.41 12.8 0.1 1 23 456 478 456 478 0.97 11 17 0.00017 0.019 17.1 0.8 1 21 484 504 484 505 0.95 12 17 0.00017 0.019 17.1 0.8 1 21 532 552 532 553 0.95 13 17 0.00017 0.019 17.1 0.8 1 21 580 600 580 601 0.95 14 17 0.00017 0.019 17.1 0.8 1 21 628 648 628 649 0.95 15 17 0.00017 0.019 17.1 0.8 1 21 676 696 676 697 0.95 16 17 0.00017 0.019 17.1 0.8 1 21 724 744 724 745 0.95 17 17 0.00012 0.014 17.4 0.9 1 21 772 792 772 793 0.95
Sequence Information
- Coding Sequence
- ATGAAAGTGCCCGAGCAAAAGGTCTCCAATATCAGAACATTCGAACCGTTATCTCAACACAGCGAGTCACCGGTGGGCACTGTCGTCGGCGATAGCAGCGAAACATATGCCGCGGCGGTCACTAACAACATAAAACAAGGTAGCCGGCGTAAGAATGCACCTACGGTGCTAAACCATCCATCATCAGTGGTGTACCACAAGGAGGCGGAGCATGCAGGACAACGCTACGTTTGCGGGAAGTGTGGCAAACTGTTCAAGCACAAACAACTACTCCAGAGGCACCAGCTGGTCCACTCGCAGGCGCGGCCTTACAGCTGCAAGATCTGCAGCACGTCTTTCAAAACGAAGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGTTCGCGTGTGAGCTGTGCAAGCATCGCTTCGCGCACAAGACCAGCCTCACGCTGCACATGCGGTGGCACTCTGGTATGTGTACTGTGACGCTCAGTCCCCAGGCTGTAGTTCTAAACGAAGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGTTCGCGTGTGAGCTGTGCAAGCATCGCTTCGCGCACAAGACCAGCCTCACGCTGCACATGCGGTGGCACTCTGGTATGTGTACTGTGACGCTCAGTCCCCAGGCTGTAGTTCTAAACGAAGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGTTCGCGTGTGAGCTGTGCAAGCATCGCTTCGCGCACAAGACCAGCCTCACGCTGCACATGCGGTGGCACTCTGGTATGTGTACTGTGACGCTCAGTCCCCAGGCTGTAGTTCTAAACGAAGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGCGAACCTGCTGAACCACGCGCTGCTCCACTCCGGCGTGAAGCGGTTCGCGTGTGAGCTGTGCCAGCATCGCTTCGCGCACAAGACCAGCCTCACGCTGCACATGCGGTGGCACTCTGGCCTGAAGCCGTTCTCGTGCGCGACGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACCAGTGCGCGCAGTGTCCGCGCCGGTTCACCACCTCCTCGCAGCACCGGCTGCACGCGCGCCGCCACGCCGCCGACACCGAGCGCCCGCACCTCTGCAACCACTGCGGGAAACGGTTCCTGTGCCGCGCGTCGTGGCTGGCGCACGTGCGGCGCGAGGCGGGCGCGCTGCGGCACcgctgcggcgcgtgcggccGCGGCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGTAGGCGAGTCGCGAGCCTTGCGGCACCTTCGCCGAGCGCTGGGCGCTGGCCAAGCACGCGCGCCGCCACACCGGCGAGCGGCCCTTCAAGTGTGCGCTGTGCCCGCGGGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGGTAGgggaaaaaaacaaaatccgCCGTTTCGAAAACCTGCCAATCGACACCCAAGGCTATGGATGGCTCGAGGCTTGCGACACCGCTGTACTGCGGCAAAACTCGCTCCCTCCGCTGCTGAACGAAAAAACCTGCGTAAGCGTCTGATTAATTTGCGGACGAAGAAAGATAACCAAGTGCACAAGCAAGTGAGCCTGCTGGTGGACAAGcggcctgcgcccgcgccggcgGAGGAGGAGCGCGTCATCTACGTGACGTACGACGCGGAGGGCGCGCCCGGCGCCTTCCACATCGTCGACACCGACCAGGTGGCGACACTAGAAAACGACAGCAAGGTGGTAACGGAGTGCGAGGTGTACAGCGGCTCCTCGCTGCTCCTCCGACAGGGGGAGGGGGCCGCGCCTGGGGAGGGGGAGGAGGAGGGGGAGGGGGAGgaggagggggaggggggggagCACGTGCAGCTGGACGAGCTGGCGGAGCCCCTCGTGTTGGAGGAGAACGACCATATGCCGGTGACGGACGAGCAGGGCAACCCGCTGCACTTCACGATGCAGGACGGCACGCGGCTCGCCATCACCTCCGCCGACGGCAAGTCCTTGCAGGTTATCACTCAAGATGGCCAGACGATCCCAGTGGAAATCAACGGATTCGCTGATGAAGAGGAGATAGAGAGCGCGGACACCATAGTGCACCAGCTCAACCTGCAGAAGACCGTCGACCAGAACGGCGCCTCCCACGTCGCCCACTACTTCACCATCGTCTAG
- Protein Sequence
- MKVPEQKVSNIRTFEPLSQHSESPVGTVVGDSSETYAAAVTNNIKQGSRRKNAPTVLNHPSSVVYHKEAEHAGQRYVCGKCGKLFKHKQLLQRHQLVHSQARPYSCKICSTSFKTKANLLNHALLHSGVKRFACELCKHRFAHKTSLTLHMRWHSGMCTVTLSPQAVVLNEGEPAEPRAAPLRREAANLLNHALLHSGVKRFACELCKHRFAHKTSLTLHMRWHSGMCTVTLSPQAVVLNEGEPAEPRAAPLRREAANLLNHALLHSGVKRFACELCKHRFAHKTSLTLHMRWHSGMCTVTLSPQAVVLNEGEPAEPRAAPLRREAANLLNHALLHSGVKRFACELCQHRFAHKTSLTLHMRWHSGLKPFSCATCGKSFSQKGNLSEHERIHTGEKPYQCAQCPRRFTTSSQHRLHARRHAADTERPHLCNHCGKRFLCRASWLAHVRREAGALRHRCGACGRGFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKASREPCGTFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKASREPCGTFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKASREPCGTFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKASREPCGTFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKASREPCGTFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKASREPCGTFAERWALAKHARRHTGERPFKCALCPRAFADCSNLNKHKKVGESRALRHLRRALGAGQARAPPHRRAALQVCAVPAGLRRLLQPQQTQEGRGKKQNPPFRKPANRHPRLWMARGLRHRCTAAKLAPSAAERKNLRKRLINLRTKKDNQVHKQVSLLVDKRPAPAPAEEERVIYVTYDAEGAPGAFHIVDTDQVATLENDSKVVTECEVYSGSSLLLRQGEGAAPGEGEEEGEGEEEGEGGEHVQLDELAEPLVLEENDHMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGFADEEEIESADTIVHQLNLQKTVDQNGASHVAHYFTIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -