Atur010607.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990283.1:4441670-4449528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.4e-05 0.0049 18.9 1.4 2 23 74 95 73 95 0.97 2 20 0.0011 0.13 14.4 2.1 2 23 103 124 102 124 0.97 3 20 0.0014 0.16 14.1 0.2 1 23 130 152 130 152 0.97 4 20 0.00014 0.016 17.3 3.2 1 23 158 180 158 180 0.96 5 20 1.2e-05 0.0014 20.6 0.2 3 23 188 208 186 208 0.97 6 20 4.3 4.8e+02 3.2 0.3 1 11 214 224 214 228 0.87 7 20 1.7e-05 0.0019 20.2 0.3 3 23 230 250 230 250 0.98 8 20 4.3 4.8e+02 3.2 0.3 1 11 256 266 256 270 0.87 9 20 1.7e-05 0.0019 20.2 0.3 3 23 272 292 272 292 0.98 10 20 4.3 4.8e+02 3.2 0.3 1 11 298 308 298 312 0.87 11 20 1.7e-05 0.0019 20.2 0.3 3 23 314 334 314 334 0.98 12 20 3.3e-05 0.0038 19.2 0.5 1 23 340 362 340 362 0.98 13 20 2.9e-06 0.00033 22.6 2.1 1 23 368 390 368 390 0.98 14 20 0.00051 0.057 15.5 0.4 1 23 396 418 396 418 0.97 15 20 0.0014 0.16 14.1 3.9 1 22 424 445 424 453 0.95 16 20 0.0014 0.16 14.1 3.9 1 22 459 480 459 488 0.95 17 20 0.0014 0.16 14.1 3.9 1 22 494 515 494 523 0.95 18 20 0.0014 0.16 14.1 3.9 1 22 529 550 529 558 0.95 19 20 0.0014 0.16 14.1 3.9 1 22 564 585 564 593 0.95 20 20 0.00038 0.043 15.9 4.2 1 23 599 621 599 621 0.97
Sequence Information
- Coding Sequence
- ATGCCAGTCATGTCTAGATTTATTAAATCAGCTGTAAAAGATGAAGGACAACCAGTTGAAAGCAATATTGTGGATGAGTTAGCTGAACAGGGGTTACAAGAAGACTCATCCTCCAGCCATGAGTCTAATGAACCTTACGAGGAGGTAGCGCCTAAAAAAATGAGAAAGAGACGAGTATACAGAAAGAGTGCTGAACCGAGTAAGAAAAGGGACAGAATGAAATGTGTCAAATGTGACAAGAGGTTCCAAAAATATGAGACACTAGAGGCTCACATGCGGAGCCACTTTGGCAAGAAGCCAGACATCAAATGCAGCGAATGCGACAAATCCTTCCTCACGTTTCGGAGTCTAACCAGCCACTCGCGCACCCACTCGGGAGTGAGGAAGTACCAGTGCCTGACGTGCGGCAAAGGCTTCGCCTACCTCAACGTGCTAAAGAACCATGAGCTCATACACGCGGGTATCAAAAAGCACGCGTGCCATCTGTGCGATGCTAGATTTGTGCAGGCGCATAATTTGAAGATGCACATAGAGACGCACAAGAACGAGCGCAACTACGGCTGCTACCAGTGCGGCAAGAAGTTCGCGCAGCCCGGCAACCTCAAGATACACCTCATCCGGCACACCGGCATCAAGAACTACGCGTGCACACAGTGCGACATGAGGTTCTACATCAAGGTACACGGCTGCTACCAGTGCGGCAAGAAGTTCGCGCAGCCCGGCAACCTCAAGATACACCTCATCCGGCACACCGGCATCAAGAACTACGCGTGCACACAGTGCGACATGAGGTTCTACATCAAGGTACACGGCTGCTACCAGTGCGGCAAGAAGTTCGCGCAGCCCGGCAACCTCAAGATACACCTCATCCGGCACACCGGCATCAAGAACTACGCGTGCACACAGTGCGATATGAGGTTCTACATCAAGGTACACGGCTGCTACCAGTGCGGCAAGAAGTTCGCGCAGCCCGGCAACCTCAAGATACACCTCATCCGGCACACCGGCATCAAGAACTACGCGTGCACACAGTGCGACATGAGGTTCTACATCAAGGCCGACCTAGCGAAGCATATGCGATCGCATTCGACCGACAAGCCCTTCTCTTGCCAACTGTGCGACAAAACCTTCAAAAGTAGGAGTTTCATGGCGATACATATGAGAACGCATACAGGAGAGCGTCCGTACGCCTGCGACCTGTGTCCCAAGAAGTTCATGGCGCGTAAGGACCTGCGCAACCACCGCATGATCCACACCGGCGAGAAGCCGCACAAGTGCCAGCTCTGCAGCCAGGCCTTCATACAGAAGTGCGCGCTCAACCGACACATGAAGGTACTATACAACCACCGCATGATCCACACCGGCGAGAAGCCGCACAAGTGCCAGCTCTGCAGCCAGGCCTTCATACAGAAGTGCGCGCTCAACCGACACATGAAGGTACTATACAACCACCGCATGATCCACACCGGCGAGAAGCCGCACAAGTGCCAGCTCTGCAGCCAGGCCTTCATACAGAAGTGCGCGCTCAACCGACACATGAAGGTACTATACAACCACCGCATGATCCACACCGGCGAGAAGCCGCACAAGTGCCAGCTCTGCAGCCAGGCCTTCATACAGAAGTGCGCGCTCAACCGACACATGAAGGTACTATACAACCACCGCATGATCCACACCGGCGAGAAGCCGCACAAGTGCCAGCTCTGCAGCCAGGCCTTCATACAGAAGTGCGCGCTCAACCGACACATGAAGGTACTATACAACCACCGCATGATCCACACCGGCGAGAAGCCGCACAAGTGCCAGCTCTGCAGCCAGGCCTTCATACAGAAGTGCGCGCTCAACCGACACATGAAGGGTCACCTGCGCGACgagcgcgcgccgctcgcgcccgCGCACTACGAGTACCGCCCCCACGCGTGA
- Protein Sequence
- MPVMSRFIKSAVKDEGQPVESNIVDELAEQGLQEDSSSSHESNEPYEEVAPKKMRKRRVYRKSAEPSKKRDRMKCVKCDKRFQKYETLEAHMRSHFGKKPDIKCSECDKSFLTFRSLTSHSRTHSGVRKYQCLTCGKGFAYLNVLKNHELIHAGIKKHACHLCDARFVQAHNLKMHIETHKNERNYGCYQCGKKFAQPGNLKIHLIRHTGIKNYACTQCDMRFYIKVHGCYQCGKKFAQPGNLKIHLIRHTGIKNYACTQCDMRFYIKVHGCYQCGKKFAQPGNLKIHLIRHTGIKNYACTQCDMRFYIKVHGCYQCGKKFAQPGNLKIHLIRHTGIKNYACTQCDMRFYIKADLAKHMRSHSTDKPFSCQLCDKTFKSRSFMAIHMRTHTGERPYACDLCPKKFMARKDLRNHRMIHTGEKPHKCQLCSQAFIQKCALNRHMKVLYNHRMIHTGEKPHKCQLCSQAFIQKCALNRHMKVLYNHRMIHTGEKPHKCQLCSQAFIQKCALNRHMKVLYNHRMIHTGEKPHKCQLCSQAFIQKCALNRHMKVLYNHRMIHTGEKPHKCQLCSQAFIQKCALNRHMKVLYNHRMIHTGEKPHKCQLCSQAFIQKCALNRHMKGHLRDERAPLAPAHYEYRPHA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -