Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990303.1:9044336-9054451[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00036 0.041 16.0 0.2 1 23 146 168 146 168 0.97

2 15 0.00012 0.013 17.5 0.1 2 20 190 208 190 210 0.94

3 15 3.3e-06 0.00037 22.4 0.7 2 23 219 240 219 240 0.97

4 15 2e-07 2.2e-05 26.3 0.8 1 23 246 268 246 268 0.98

5 15 7.1e-05 0.008 18.2 0.9 1 23 274 296 274 296 0.96

6 15 0.18 20 7.5 6.5 1 23 302 324 302 324 0.98

7 15 0.00016 0.018 17.1 2.0 1 23 330 353 330 353 0.97

8 15 0.00049 0.055 15.6 1.5 1 20 361 380 361 383 0.94

9 15 0.00013 0.014 17.4 1.0 1 23 389 411 389 411 0.97

10 15 0.00033 0.037 16.1 0.6 1 23 417 439 417 439 0.98

11 15 5.4e-05 0.0061 18.6 1.1 1 23 445 467 445 467 0.97

12 15 4.7e-07 5.4e-05 25.1 0.2 1 23 473 495 473 495 0.98

13 15 1.6e-05 0.0018 20.2 6.1 1 23 500 523 500 523 0.95

14 15 8.7e-05 0.0099 17.9 0.7 1 23 529 551 529 551 0.95

15 15 6.8e-07 7.7e-05 24.6 1.0 1 23 557 579 557 579 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00036	0.041	16.0	0.2	1	23	146	168	146	168	0.97
2	15	0.00012	0.013	17.5	0.1	2	20	190	208	190	210	0.94
3	15	3.3e-06	0.00037	22.4	0.7	2	23	219	240	219	240	0.97
4	15	2e-07	2.2e-05	26.3	0.8	1	23	246	268	246	268	0.98
5	15	7.1e-05	0.008	18.2	0.9	1	23	274	296	274	296	0.96
6	15	0.18	20	7.5	6.5	1	23	302	324	302	324	0.98
7	15	0.00016	0.018	17.1	2.0	1	23	330	353	330	353	0.97
8	15	0.00049	0.055	15.6	1.5	1	20	361	380	361	383	0.94
9	15	0.00013	0.014	17.4	1.0	1	23	389	411	389	411	0.97
10	15	0.00033	0.037	16.1	0.6	1	23	417	439	417	439	0.98
11	15	5.4e-05	0.0061	18.6	1.1	1	23	445	467	445	467	0.97
12	15	4.7e-07	5.4e-05	25.1	0.2	1	23	473	495	473	495	0.98
13	15	1.6e-05	0.0018	20.2	6.1	1	23	500	523	500	523	0.95
14	15	8.7e-05	0.0099	17.9	0.7	1	23	529	551	529	551	0.95
15	15	6.8e-07	7.7e-05	24.6	1.0	1	23	557	579	557	579	0.98

Sequence Information

Coding Sequence: ATGACTGACGTGACTGTTGACGTAGTGAAGGTAGAACATACTTGCCGATGCTGCTTGATACGCCCGCCCGAAAAAGGATTGAGGACGCTGTACACCCATCTTGGCAAAAGAGAGATATATGCTGATATGCTGAGAGAATGCTTTGATATAAACTTAAATCTAGGTGACAATGAGTGTGGGATCTGCGAGTTGTGCGTAGGTCGCCTGCGGGACGCGACCAACTTCAAACTGCAGGTGCAGCGCAGCCAGGAGGAGCTGGAGAGAACACTCAATGTCCAAGATTTCAAAGCTACTATCAAAGTTGAAATAATAGAGGTGTCCCCTGATGATACGCCGAGTGAGGAGGCGCCGACTGAGGTAGATAgattaaatttatcGTTTAACGCAGCGGCACTGCCCCCAGTGGAGACGGAATCGGTGGTGTCCGGAGACAGATACGTGTGCCTGGCGTGCAAGAACACGTTTGACAACCCCGACAGCCTCATGCGACACATGACAGTCCACATGTGCGTTCAGCATGTCGGCGCACCTAAGAAAAAAACTCAACCTCAAACTGGCAAGAAAAATACGTGCGGAGTTTGCGGTAAATCTTTCTCAGTGGAAAGTAAACTAAAGAAACATGTCGAAGAATGCGAACGCCAGAGGGAGGAAAGAACTTGCGACGTATGCCAGAAAGTATTCTCAAACAAATCTAACATGAAAGCTCACAGGATAGTGCACACAGGAGAGAGACCTTATTCTTGCGAGGTTTGCAAGAAAGAATTCGCCCGAAAGGATAATTTAATATCTCATATGAAATCTCACACGGGGGACTTTCCGTTTGCGTGCGATAGGTGCGATAAAAAGTTCGCTGATAATACTCAATTGTTTAATCATAAGCTGATTCACTCGGGAATGAAATCTTTCACTTGTGATTTTTGCGAAAAACAATTCCTGCACAAGAGTCACTTTGACACGCATGTGCGGTTGCATACTGGAAAGAAAGAACACACTTGTGATGTATGTCAAAGGCGATTTGTGCTTAAAAGGTACCTTATTGCTCATATACGACGAACTCACaatgaaaataagaaatatagATATTCGTGTGACGTTTGCAAGAAGAAATTTTCAGTCAAAAATTATTTGATGCGTCATAAATGGGTACACTCTGCTAATAAACCTTTCGCTTGCGACGTTTGTGAAAAGCAATTTGTATACAGACACGCTTTAACTGTACACAAGCGCATTCACACGGGGGAAAAACCCTATAAATGTGAGTTGTGCTATCAGGAATTTAGACAAATAAGCACTTTAAATACTCACGTTTTAGTTCACACTGGTGAAAAACCTTTTGCATGTGACGTGTGCGAAAAGAAATTTACAAGTAAACGTCGCTTAAATTACCATATGCTAATACACACGGGAGAGAAGACTTTTTCTTGTGAAATTTGCGGTAAGCGATTTGGAACGCAGGGGAATCTAAAAGGTCACATGTTAATACACTCTGGAATAAAACACAGCTGTGAGATATGTCATAGGAAATTTACACACAAATCTGCTTTAACTGTCCATATGAGGTTTATCCACACAGGAGAGAGACCGCACGCTTGCACCGTGTGTAAGAAGGCGTTCGCTGTGCTGGCGACGTTGAAGCGACACATGTTTGTGCACACCGGTGAGAAACCTTACGAATGTGATATATGTAGCAGGCGGTTTGCAACGTCGTCTAACTTAAAGAAACACAAATTGGTACACGCTAGATAA
Protein Sequence: MTDVTVDVVKVEHTCRCCLIRPPEKGLRTLYTHLGKREIYADMLRECFDINLNLGDNECGICELCVGRLRDATNFKLQVQRSQEELERTLNVQDFKATIKVEIIEVSPDDTPSEEAPTEVDRLNLSFNAAALPPVETESVVSGDRYVCLACKNTFDNPDSLMRHMTVHMCVQHVGAPKKKTQPQTGKKNTCGVCGKSFSVESKLKKHVEECERQREERTCDVCQKVFSNKSNMKAHRIVHTGERPYSCEVCKKEFARKDNLISHMKSHTGDFPFACDRCDKKFADNTQLFNHKLIHSGMKSFTCDFCEKQFLHKSHFDTHVRLHTGKKEHTCDVCQRRFVLKRYLIAHIRRTHNENKKYRYSCDVCKKKFSVKNYLMRHKWVHSANKPFACDVCEKQFVYRHALTVHKRIHTGEKPYKCELCYQEFRQISTLNTHVLVHTGEKPFACDVCEKKFTSKRRLNYHMLIHTGEKTFSCEICGKRFGTQGNLKGHMLIHSGIKHSCEICHRKFTHKSALTVHMRFIHTGERPHACTVCKKAFAVLATLKRHMFVHTGEKPYECDICSRRFATSSNLKKHKLVHAR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -