Atur045685.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apotomis turbidana
Gene Symbol
-
Assembly
GCA_905147355.1
Location
LR990302.1:41190-49222[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00019 0.021 16.9 6.4 1 23 13 35 13 35 0.96
2 21 0.013 1.4 11.1 1.2 1 23 41 63 41 64 0.95
3 21 0.00067 0.076 15.1 2.6 1 23 70 92 70 92 0.98
4 21 5.4e-05 0.0061 18.6 2.1 1 23 98 120 98 120 0.98
5 21 4e-05 0.0045 19.0 0.7 2 23 127 148 126 148 0.97
6 21 7.6e-06 0.00086 21.3 6.9 1 23 154 176 154 176 0.99
7 21 2e-05 0.0023 19.9 0.2 1 23 182 204 182 204 0.98
8 21 6.6 7.4e+02 2.6 4.7 3 20 354 371 352 373 0.89
9 21 8e-06 0.00091 21.2 0.8 1 23 378 400 378 400 0.99
10 21 1.3e-05 0.0015 20.5 0.2 2 23 407 428 406 428 0.97
11 21 8.4e-07 9.5e-05 24.3 0.8 1 23 431 453 431 453 0.97
12 21 0.00067 0.076 15.1 6.0 1 23 459 481 459 481 0.99
13 21 0.53 60 6.0 5.0 1 23 487 509 487 510 0.93
14 21 0.00022 0.024 16.7 1.5 1 23 516 538 516 538 0.97
15 21 4.8e-05 0.0055 18.7 3.1 1 23 544 566 544 566 0.98
16 21 4.2e-07 4.8e-05 25.2 1.3 1 23 572 594 572 594 0.99
17 21 4.4e-07 5e-05 25.2 0.3 1 23 600 622 600 622 0.99
18 21 5.6e-06 0.00063 21.7 0.4 1 23 628 650 628 650 0.98
19 21 0.00032 0.036 16.2 6.2 1 23 656 678 656 678 0.98
20 21 7.7e-05 0.0087 18.1 1.5 1 23 684 706 684 706 0.98
21 21 0.00025 0.029 16.5 1.4 1 23 712 734 712 734 0.99

Sequence Information

Coding Sequence
ATGAATCATAAACGATTTCACACGGGCGTCAGATCTCATGCTTGTGAATTTtgtgataaaaagtatttccgTAAGTCACATTATGTTCGACATATAAGGACTCATACGGGCGAAAAGCCTTACATCTGTGAATACTGTAACGAGGGATTTATAACTAAGCAAAGCCAAGTACTGCACGAGCGGAACCACCACACGGGCGACAAACCCTACCACTGCGGCGTGTGCCTTAAGGCGTTTGCGCACAAGGGCACCCTCACCGCGCACAGTAGGAAGCACACCGGGCAGAGACCTTATTCTTGCGATGTTTGTAATAAGAACTTTTATAGTGACTATGACTTAAAACGACACAAATTAACCCATACTGGGGACAAGCCTTCTAGCTGCGAAATATGTGGCAAACAATATGCCGACAAAAAGTACTTAAAACTGCACAAACGGATTCACTCAGGCGAGAAGCCGTACAGCTGCAAGCGGTGTCACAAGCAGTTTACCCTAAAAACCAACTTGACACGACACATGCGAACTCACACTGACGATCGGCATTACGCGTGTGACGAATGTGACAAAAGATTCGGCAGCAAGGACGGTTTATTAGTACACAAACGAATTCACACGGGAGTCACGCTCTCGACGCTCGGTGGTTTACGTTGTCGGGTGCGCTTGTCGCGTCTGTCGTCGTGTCGCTCGTGGGGCGCGCCTGTCGCCTGCGCGGGGAGCGTGGCACACACATGCGCTCGCGACACGCggcacgcgcgcgccgcgctgcgGGCCGACGCCGCCAGACGCCGCCTCGTAGCCACAGCGCGCCACCAGACAAACGAGCGCAACGAAAGTGGCGCGCGCCCGAGCGACAGACGCGGTAGAAACAGGCCGGAATCTGTCCATAAAAGTGAAGATCATCGAGCGCCAAACATACACACTGGTGGAGAACCTCGTATAAGGAAAAGGAAAGTTGCTACTAGTAAGATTTCCGATAGCGCCAATTTGAGTTTTAGTAACACCTCTTCAATAGTGGGTCCCTCTCGGCGCGGAGTGCCGGCCGGCGCGCAGCCTTGCGCCTGCGCAGCCTGCGGCCGACGATTCCAATACAAGCATCACTTCGACGCGCACACGTGCGCCTCGCCCGGCCCTTACACCTGCGACGTGTGCAAAAAGCCGTTCATGCAAAAACGCACACTGGAAAATCACATCAAAGTACATGCAGAGCGGAAACCTGATTACTGCGAAGTTTGCAATGAAGAGTTTCCCAACAAGTCAGCTTTAGCGAAACATAAGAGAACTCATAAACTTTTCCAATGTGAAGAATGTAACAAATCATTTACACAAAAAAGGGGTCTAAAAAATCATATCGGAATTCACAAAGGCGAGAAGCCCTATTCTTGTGAATTGTGCCACAAAAAGTATAGAACGAGCACACTTTACCTTAGACATAAGAGGACTCATACAGGCGAAAAACCTCACAGTTGTGAATACTGTAGCAAGCGATTTATAGAAAAACAAAGCAAAGTGCTGCACGAGCGGAACCACCACACGGGCGACAAACCCTACTGCTGCGCTGTGTGCCTCAAGGCGTTTGCGCGCAAGAGCTCCCTCACCATGCACAGCAGGATACACACAGGATATCGACCATTTTCTTGCGAAGTTTGTTATAAAAAATTTATTACTAGAGCGCATTTAGAACGCCATAAAAAAATTCACACCGGAGAAAGACTTTACAGTTGCGAACAATGTGGTAAACAATTCGGACGAAAGTATACATTAACAGCGCATTTACGAACTCACACGAACAATAGACCTTACAGTTGTGACGAATGTGGCAAGCGATTTGTTAATTCAGGCGCATTAATAACGCACAAACGAACTCACACGAACGAACGACCTTACGTTTGCGAAGAATGTAACAAGGGATTTGCTCAAAAAAACTCATTAACAGTCCACAAACTAACTCACACGGGCGAAAAGCCGCACAGCTGTGAAATGTGTAACAAGCGATTTGCACTTAAACATCACTTGGCGGCGCACACGCGCACGCACACGGGCGAAAAACCGTACAGCTGTGCAATCTGTGAAACTAATTTCACACTAAAAGCACACTTACAGAACCATCTCCAGACACATGCGACCAACAAAGCGTATTCTTGCAAAATTTGTCTGAAACAGTTTGCGGGTAAATTAGCTCTGAAGAGACATAAACGGACTCACGAGGAAGAGAAATGTTTGAAAAGTGGTGCGGATACAACTGCGCGCATGCGCAGCAACGACTCTGTTTAA
Protein Sequence
MNHKRFHTGVRSHACEFCDKKYFRKSHYVRHIRTHTGEKPYICEYCNEGFITKQSQVLHERNHHTGDKPYHCGVCLKAFAHKGTLTAHSRKHTGQRPYSCDVCNKNFYSDYDLKRHKLTHTGDKPSSCEICGKQYADKKYLKLHKRIHSGEKPYSCKRCHKQFTLKTNLTRHMRTHTDDRHYACDECDKRFGSKDGLLVHKRIHTGVTLSTLGGLRCRVRLSRLSSCRSWGAPVACAGSVAHTCARDTRHARAALRADAARRRLVATARHQTNERNESGARPSDRRGRNRPESVHKSEDHRAPNIHTGGEPRIRKRKVATSKISDSANLSFSNTSSIVGPSRRGVPAGAQPCACAACGRRFQYKHHFDAHTCASPGPYTCDVCKKPFMQKRTLENHIKVHAERKPDYCEVCNEEFPNKSALAKHKRTHKLFQCEECNKSFTQKRGLKNHIGIHKGEKPYSCELCHKKYRTSTLYLRHKRTHTGEKPHSCEYCSKRFIEKQSKVLHERNHHTGDKPYCCAVCLKAFARKSSLTMHSRIHTGYRPFSCEVCYKKFITRAHLERHKKIHTGERLYSCEQCGKQFGRKYTLTAHLRTHTNNRPYSCDECGKRFVNSGALITHKRTHTNERPYVCEECNKGFAQKNSLTVHKLTHTGEKPHSCEMCNKRFALKHHLAAHTRTHTGEKPYSCAICETNFTLKAHLQNHLQTHATNKAYSCKICLKQFAGKLALKRHKRTHEEEKCLKSGADTTARMRSNDSV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-