Atur052503.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990307.1:1216820-1224334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00025 0.028 16.5 0.0 3 23 7 27 5 27 0.97 2 20 0.00016 0.018 17.1 2.3 3 23 35 55 34 55 0.97 3 20 2.5e-05 0.0029 19.6 2.2 3 23 63 83 61 83 0.98 4 20 0.0056 0.63 12.2 6.5 1 23 89 111 89 111 0.98 5 20 0.0001 0.011 17.7 2.4 2 23 131 152 130 152 0.97 6 20 2.6e-05 0.003 19.6 0.8 1 23 158 180 158 180 0.97 7 20 4.9e-05 0.0055 18.7 0.4 2 23 186 207 186 207 0.98 8 20 4e-05 0.0046 19.0 1.1 1 23 213 235 213 235 0.98 9 20 6.4e-06 0.00072 21.5 1.2 1 23 241 264 241 264 0.98 10 20 1.2e-05 0.0014 20.6 1.4 2 23 426 447 425 447 0.97 11 20 1e-05 0.0012 20.8 4.4 2 23 452 473 451 473 0.96 12 20 8.8e-06 0.00099 21.1 1.3 1 23 479 501 479 501 0.98 13 20 2.2e-05 0.0025 19.8 1.1 1 23 507 529 507 529 0.98 14 20 1.5e-06 0.00017 23.5 1.1 1 23 535 557 535 557 0.98 15 20 5.3e-05 0.0059 18.6 5.3 1 23 563 585 563 585 0.97 16 20 4.8e-06 0.00054 21.9 1.7 1 23 591 613 591 613 0.95 17 20 1.5e-05 0.0017 20.3 4.9 1 23 619 641 619 641 0.98 18 20 0.00023 0.026 16.6 2.9 1 23 660 682 660 682 0.98 19 20 5.8e-07 6.6e-05 24.8 0.8 1 23 688 710 688 710 0.99 20 20 9.3e-06 0.0011 21.0 5.5 1 23 716 738 716 738 0.98
Sequence Information
- Coding Sequence
- ATGTTATATGGATGGGCGTGCCCCGAGTGCGGCAAGCCCTCGTGGTCGCCGGCGCACCTGCGCGTGCACATGCGCGTGCACACGGGCGAGCGGCCGGCGTGCTGCCACGTGTGCGGCGCGAGGTTCCGCACCGACGGCAACCTCGCGCGGCATCTGCGCGCGCACGCCGGCGACAGGCCCTTCGGCTGCGACCACTGTCAGAAAAGGTTCTCCCAAAAGTCCGTGCTTATCAAACACGTACGAATCCACACAGGAGAGACTCCCTACTCATGCAACATTTGCCACAAGCAGTTCTCCCGAAGCTTCACGCTCGCCTGCCACCGCCGCGTCCACGGAGACTTCGTCAAGGAAGAAAAACCGGTCAAACGACCGCCCGTCCCAGAGAAGTGGACGTGTGACGTCTGCAGTAAAGTGTTCAAGAACAAATCCTACAAACACGCTCACATGCAGATGCACAACCGGACGAAACAATTCCAGTGTCGCGAGTGTGATAAAAAGTTTACAAGTGAAGTGAGCTTGCTGAAACATGTGACTGTGCATTCGGAGCAAGCGAGGAAGTGCAGTGTTTGTGAGAAACAGTTGAAGACTCAAGCGAATTTGGCGAGGCATATGCTGGTGCATACCGGGGAACGACCGTTCCCTTGTACTTATTGCAGTCAAAGGTTCACGCAGAAATCGGTGTTGGTTAAACATGAGAGAATACATACAGGGGAAATGCCGTACGAGTGTGAAATTTGTTTGAAGAAGTTTTCTAGGAGTTTCACGCTGGAGAATCATTTGAGGCGCGTTCATATGAAAGGAAGGGGGAAGTCTCAAGTGAAAGAGAGCGTGAAGTGTGAGACGAAGCCATTTTGGTGCGAGAATTGTGATAATTGGTTCAGTAGTAAAGAGTTTTATGTACATGAATGTACGAAAGGAGAGAAATTTGATTTGGGCGATGTTTGTGAAGATAATGAGCCGGAGATTGACTATAGTGACAATGAAGCAGATAAACGAAATAGTCCATTGATTGATATTAAGGAAGAAGTAATTATAGACGCGAAGCTGACTGAAGAAATCGTTGAATTCAAACGGGGAGTAGAATCTGAATTGAAAGATGAATTTGAAGCAgttgaaaattattttgatgATCCAATAATTAGTAATGATATAAACAAGCCTATAGTAAATGATGCTATTGACAATTTAATAACCAATAATGATATGAACAAGTCTATAATAAATGAGTTGAAAGCATCGGTTAAGGAAAAGAAAGCAAAAGTCAGAATGAAATGGCCATGTAAAGTTTGCAATGAGGAATTCAAAAAGAAATCACAATATAAGACCCATATCAAAACGCATGAAACTAAATGTTATTGCGAAATATGCAAGAAGCATTTTAACACAAACGGAAATCTAATGAGACATATGTTGATCCATTCCGGAGAAAAACCTTACGAATGTGAGTTCTGCAACAAACGGTTCACACAAAAGAGTGTTCTAGTAAAACATGAACGGATACACACAGGAGAGATGCCTTATAGCTGTGACGTTTGCGACAAGAAATTCGCTCGAAGCTTCACTCTGTTGAACCACAAGAACGTCCATAATACAATCAAACCATTCTCCTGCCAATACTGCCCAAAAACATTCACACAACGAAGCGCTTTGATGATCCATGAAAGGAATCACACTGGTGAACGACCATTCTGTTGCAAAATCTGCAATAAACAGTTCACTAGTAACAGTACGTTGAAAAGTCATAATAGAATTCATACTGGGACGAAGCCATTTCTTTGCGAGATTTGTAATAAGCAGTTTACGACTAGTAGTAACTTCTACAGTCATTTGAGGATACACCGAGGAGACAAGAGACATACCTGCGATGTCTGTCAGAAGAAATTCTATACGAATAGCAGTCTGACGAAACATAAACGCGTCCATATGAATAAGGTGTGCAAAGTGGAGACGCCACAAGAAGAGGACCCAAGCAAGCAATACGCCTGCACCGTGTGCCGGAAGCGATTCGCGAACTGTTACCTTTTGGATAGGCACGAACGCACGCACACAGGCGAGAAGCCATACTCTTGCGAGGATTGTGATAAAAAGTTCGCGCTGAGCGGCGACCTGACGCGGCACCGCCGCACGCACTCCGGCGAGAAGCGCTTCTCGTGCCCGCTGTGCCGCAAGCGCTTCACCCGCAGCAGCACCCTCAAGCATCACCGCCGGCTCCACGAGTCCACGTCTGAGCCATCCTAA
- Protein Sequence
- MLYGWACPECGKPSWSPAHLRVHMRVHTGERPACCHVCGARFRTDGNLARHLRAHAGDRPFGCDHCQKRFSQKSVLIKHVRIHTGETPYSCNICHKQFSRSFTLACHRRVHGDFVKEEKPVKRPPVPEKWTCDVCSKVFKNKSYKHAHMQMHNRTKQFQCRECDKKFTSEVSLLKHVTVHSEQARKCSVCEKQLKTQANLARHMLVHTGERPFPCTYCSQRFTQKSVLVKHERIHTGEMPYECEICLKKFSRSFTLENHLRRVHMKGRGKSQVKESVKCETKPFWCENCDNWFSSKEFYVHECTKGEKFDLGDVCEDNEPEIDYSDNEADKRNSPLIDIKEEVIIDAKLTEEIVEFKRGVESELKDEFEAVENYFDDPIISNDINKPIVNDAIDNLITNNDMNKSIINELKASVKEKKAKVRMKWPCKVCNEEFKKKSQYKTHIKTHETKCYCEICKKHFNTNGNLMRHMLIHSGEKPYECEFCNKRFTQKSVLVKHERIHTGEMPYSCDVCDKKFARSFTLLNHKNVHNTIKPFSCQYCPKTFTQRSALMIHERNHTGERPFCCKICNKQFTSNSTLKSHNRIHTGTKPFLCEICNKQFTTSSNFYSHLRIHRGDKRHTCDVCQKKFYTNSSLTKHKRVHMNKVCKVETPQEEDPSKQYACTVCRKRFANCYLLDRHERTHTGEKPYSCEDCDKKFALSGDLTRHRRTHSGEKRFSCPLCRKRFTRSSTLKHHRRLHESTSEPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -