Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990303.1:3498816-3505118[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.47 53 6.2 3.8 1 23 248 270 248 270 0.98

2 22 1e-06 0.00012 24.0 2.7 1 23 276 298 276 298 0.98

3 22 2.4e-05 0.0027 19.7 0.6 1 23 304 326 304 326 0.97

4 22 4.6e-05 0.0052 18.8 3.0 1 23 332 354 332 354 0.97

5 22 0.002 0.22 13.7 3.4 1 23 358 380 358 380 0.98

6 22 1.6e-07 1.8e-05 26.6 1.5 1 23 386 408 386 408 0.99

7 22 0.00028 0.032 16.3 3.9 1 23 414 436 414 436 0.98

8 22 0.00029 0.033 16.3 2.1 1 23 442 464 442 464 0.97

9 22 2.4e-06 0.00027 22.8 3.3 1 23 468 490 468 490 0.98

10 22 6.1e-08 6.8e-06 27.9 0.8 1 23 496 518 496 518 0.99

11 22 0.00016 0.019 17.1 1.5 1 23 524 546 524 546 0.97

12 22 0.00014 0.015 17.3 1.9 1 23 552 574 552 574 0.97

13 22 0.00063 0.071 15.2 2.6 1 23 578 600 578 600 0.98

14 22 1.9e-07 2.1e-05 26.3 1.1 1 23 606 628 606 628 0.99

15 22 0.00016 0.018 17.1 2.8 1 23 634 656 634 656 0.98

16 22 2.6e-05 0.003 19.6 3.7 1 23 662 684 662 684 0.98

17 22 0.18 20 7.5 3.3 1 23 709 731 709 731 0.97

18 22 0.00064 0.073 15.2 1.8 1 23 739 761 739 761 0.98

19 22 8.3e-07 9.3e-05 24.3 0.9 1 23 767 789 767 789 0.98

20 22 0.00011 0.012 17.6 0.5 1 23 795 817 795 817 0.98

21 22 2e-05 0.0022 20.0 0.1 1 23 823 845 823 845 0.97

22 22 0.00017 0.02 17.0 0.5 1 23 851 875 851 875 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.47	53	6.2	3.8	1	23	248	270	248	270	0.98
2	22	1e-06	0.00012	24.0	2.7	1	23	276	298	276	298	0.98
3	22	2.4e-05	0.0027	19.7	0.6	1	23	304	326	304	326	0.97
4	22	4.6e-05	0.0052	18.8	3.0	1	23	332	354	332	354	0.97
5	22	0.002	0.22	13.7	3.4	1	23	358	380	358	380	0.98
6	22	1.6e-07	1.8e-05	26.6	1.5	1	23	386	408	386	408	0.99
7	22	0.00028	0.032	16.3	3.9	1	23	414	436	414	436	0.98
8	22	0.00029	0.033	16.3	2.1	1	23	442	464	442	464	0.97
9	22	2.4e-06	0.00027	22.8	3.3	1	23	468	490	468	490	0.98
10	22	6.1e-08	6.8e-06	27.9	0.8	1	23	496	518	496	518	0.99
11	22	0.00016	0.019	17.1	1.5	1	23	524	546	524	546	0.97
12	22	0.00014	0.015	17.3	1.9	1	23	552	574	552	574	0.97
13	22	0.00063	0.071	15.2	2.6	1	23	578	600	578	600	0.98
14	22	1.9e-07	2.1e-05	26.3	1.1	1	23	606	628	606	628	0.99
15	22	0.00016	0.018	17.1	2.8	1	23	634	656	634	656	0.98
16	22	2.6e-05	0.003	19.6	3.7	1	23	662	684	662	684	0.98
17	22	0.18	20	7.5	3.3	1	23	709	731	709	731	0.97
18	22	0.00064	0.073	15.2	1.8	1	23	739	761	739	761	0.98
19	22	8.3e-07	9.3e-05	24.3	0.9	1	23	767	789	767	789	0.98
20	22	0.00011	0.012	17.6	0.5	1	23	795	817	795	817	0.98
21	22	2e-05	0.0022	20.0	0.1	1	23	823	845	823	845	0.97
22	22	0.00017	0.02	17.0	0.5	1	23	851	875	851	875	0.92

Sequence Information

Coding Sequence: ATGGTTGAGGAAGCGGCTCTTGATGCAATGGAAGCGCTCTCCTCTTGTCCATGCTGTATGTTAAGACCGCCAGTGAAAAGTTTGACAACGCCGTACATGCATTTAGACAAAACTGAAAcatatttagaaatgctgaaAGAATGTTTCAATATACAGCTGAGTTTAGGTGAAGATGCATGTGGCATCTGTGAGAAGTGTGTGGTGCGTCTGCGAGACGCGAGTGACTTCAAGCTGCAAGTACAGCGCAGCCAGGAGCGGCTGCGGGTGGCGCTGGAGAGAGCACTACTAAACGATGTGAAGCCCGAGGATGAAGATGTGGCGGTTGATGAGCCACTGCCCCGAAGTACATGCTATATTTCAGTTATCGATCCAGACGTGAAGCCCGACAAGCTGGAGCCCGACTGCGATGATGTGACGAGTGACGCGCCAGTGCCCCGAAGTACATACTGTGTTTCAGGTTTAGAGGACGAGCGCCCCGCCCTGTCGGCGATGTCGGACGACCTCTCGAGCGaggaggaaaaaaaaaacttgatatcACTGCAAAAACCGGACAGCCCTGTACTCATTCCACAGCGGCAGCAGCTCGCGATGACGTATTCCGTCAAGATCGAGCGCGGTGCGCACGCGCACCAGGTGTGCGAGGACACGTGTGACCACAAACCCAGTCGCATGGGACACGAGACAGAGTCAGAGTCCTGTCAGAACTTAGCTAGGCATAACAGATTACACTCTGGAGAAGCATTTTACTGTAAGGTTTGTTATAAACAGTGTGCTAGTATAAATTTCTTAATCAATCATTCGAGACGTCACACGGGTGAGTCTTCTTTTTATTGTGACGTATGCAAAAAGGAATTTAAACATAAACCAAATTTGCGCGTTCATATGCGTGTCCACACGGGGGCGAGGCCCTACTCTTGTGAGACATGCAAGAAGCAGTTCAGACAAAAGGCAGCGTTAAACTCCCATATACTAGGACATAAAGGTGTATACCGGTACGCCTGTGATAAATGCAACAAGAAATTCACACTCAAAAGTAAATTGAATAGCCATAGAAGACTACACACCAAACCATTTTCATGCACAATTTGTAACAAACGGTATCCGGAAAGATGCCGTCTGAATGATCATTTGCGAACTCACTCAGAGGAATTTAATTACCAATGTAATGTGTGCAAAAAAGGATTTAAACGAAAAGCTCTTTTGAGAATTCATATGCGCAGCCACTTGGAGATAAAGCCGTACTGCTGCGAGACATGCAAGATGCGATTCACACAAAAAGGAACGTTGAACTCTCATATACTACGACATAAAGGTGTTTACCAGTACGCCTGCGACACGTGTAACAAGAAATTCATACTCAAAAGTAAATTGAACAGCCATAAAAGACTACACACGAAACCTTTTTCATGCACAATTTGTAACAAACGATACGCGCAAAGCAGCCATCTGAAGGATCATTTGAGATCTCACTCAGATGATTTAAATTACCAATGTGATGTATGTAAAAAAGGATTTAAAAGGAAAGCTAATTTGAAAGTTCATATACGCATCCACATGGATATAAAACCGTACTCCTGCGAGACATGCAAGATGCAATTCACACAAAAAGGAAAGTTAAACAACCATATACTACAACATAAAGGTGTTTACCGGTACGCTTGCGAAACGTGCAACAAAAAATTCATACTCAAAAGTAAATTGAATAGCCATAGAAGACTACACACCAAACCATTTTCATGCACAATTTGTAACAAACGGTATCCGGAAAGATGCCTTCTGAATGATCATTTGCGATCTCACTCAGAGGAATTTAATTATCAATGTGATGTGTGCAAAAAAGGATTTAAACGAAAAGCTCTCTTGAGAATTCATATGCGCAGCCACTTGGAGATAAAGCCGTACTGCTGCGAGACATGCAAGATGCGATTCACACAAAAAGGAGCGTTGAACTCCCATATACTACGACATAAAGGTGTTTACCAGTACGCCTGCGACACGTGCAACAAGAAATTCATACACAAAACTAACTTGAACAGCCATAAAAGAGTACACACGAACACGAGACCTTTTTCAAGCAAGAATACAACGCATCATATAAGACCTAAACAAGCAGAAAATGAATTATTCTGTTGCGAAAAATGCGGAAAGCTATGTGCTAGTAAAGCTATTTTGAAGAGTCATTTATTATCACACACGAAGTTGAAGGTAAAGCTATATTCCTGCGATATATGTGGCAAACAGCTTATGAGCTCACACACTTTAATGACACACAAGAGGATACACACAGGGGAGAAACCTTATCCCTGCAAAATATGCGAAAAACGGTTCAGAAATAGCTCTACTTTAAGATCCCATTTGTTGGTACACTCGGGACTGAAATCATTCTCATGTGAAGTATGTAACAAGCAATTTGGACTCAAATCCGCTTTAACGGTGCACAAGCGAATCCACACAGGAGAGAGGCCGTTCGCTTGCGATCTGTGCCCCAAGGCGTTCAATGTGTCTGCCAGCTTAATTAATCACCGTCGAACACACACCGGGGAGAAGCCGTTTGCTTGCACAATATGCAACGTTTCGTATACTTTCAAGTCGGGTTTGGTTAAACATCAACGATCACAAGCACACGCAAGGAAAACTAATTCTTAA
Protein Sequence: MVEEAALDAMEALSSCPCCMLRPPVKSLTTPYMHLDKTETYLEMLKECFNIQLSLGEDACGICEKCVVRLRDASDFKLQVQRSQERLRVALERALLNDVKPEDEDVAVDEPLPRSTCYISVIDPDVKPDKLEPDCDDVTSDAPVPRSTYCVSGLEDERPALSAMSDDLSSEEEKKNLISLQKPDSPVLIPQRQQLAMTYSVKIERGAHAHQVCEDTCDHKPSRMGHETESESCQNLARHNRLHSGEAFYCKVCYKQCASINFLINHSRRHTGESSFYCDVCKKEFKHKPNLRVHMRVHTGARPYSCETCKKQFRQKAALNSHILGHKGVYRYACDKCNKKFTLKSKLNSHRRLHTKPFSCTICNKRYPERCRLNDHLRTHSEEFNYQCNVCKKGFKRKALLRIHMRSHLEIKPYCCETCKMRFTQKGTLNSHILRHKGVYQYACDTCNKKFILKSKLNSHKRLHTKPFSCTICNKRYAQSSHLKDHLRSHSDDLNYQCDVCKKGFKRKANLKVHIRIHMDIKPYSCETCKMQFTQKGKLNNHILQHKGVYRYACETCNKKFILKSKLNSHRRLHTKPFSCTICNKRYPERCLLNDHLRSHSEEFNYQCDVCKKGFKRKALLRIHMRSHLEIKPYCCETCKMRFTQKGALNSHILRHKGVYQYACDTCNKKFIHKTNLNSHKRVHTNTRPFSSKNTTHHIRPKQAENELFCCEKCGKLCASKAILKSHLLSHTKLKVKLYSCDICGKQLMSSHTLMTHKRIHTGEKPYPCKICEKRFRNSSTLRSHLLVHSGLKSFSCEVCNKQFGLKSALTVHKRIHTGERPFACDLCPKAFNVSASLINHRRTHTGEKPFACTICNVSYTFKSGLVKHQRSQAHARKTNS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -