Atur040053.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- ESRRB
- Assembly
- GCA_905147355.1
- Location
- LR990298.1:2882317-2893538[+]
Transcription Factor Domain
- TF Family
- RXR-like
- Domain
- zf-C4|RXR-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. All RXR heterodimers preferentially bind response elements composed of direct repeats of two AGGTCA sites with a 1-5 bp spacer. RXRs can play different roles in these heterodimers. RXR acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor, or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, functioning as a receptor for 9-cis RA, independently of other nuclear receptors. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, RXR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [cite:PUB00121610], [cite:PUB00121611], [cite:PUB00121612], [cite:PUB00025660], [cite:PUB00121613], [cite:PUB00092048], [cite:PUB00092725], [cite:PUB00092726], [cite:PUB00016724], [cite:PUB00059514PMID:18971932
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.6e-05 0.46 11.9 0.0 4 31 234 261 231 262 0.90 2 18 8.6e-05 0.46 11.9 0.0 4 31 301 328 298 329 0.90 3 18 8.6e-05 0.46 11.9 0.0 4 31 368 395 365 396 0.90 4 18 8.6e-05 0.46 11.9 0.0 4 31 435 462 432 463 0.90 5 18 8.6e-05 0.46 11.9 0.0 4 31 502 529 499 530 0.90 6 18 8.6e-05 0.46 11.9 0.0 4 31 569 596 566 597 0.90 7 18 8.6e-05 0.46 11.9 0.0 4 31 636 663 633 664 0.90 8 18 8.6e-05 0.46 11.9 0.0 4 31 703 730 700 731 0.90 9 18 8.6e-05 0.46 11.9 0.0 4 31 770 797 767 798 0.90 10 18 8.6e-05 0.46 11.9 0.0 4 31 837 864 834 865 0.90 11 18 8.6e-05 0.46 11.9 0.0 4 31 904 931 901 932 0.90 12 18 8.6e-05 0.46 11.9 0.0 4 31 971 998 968 999 0.90 13 18 8.6e-05 0.46 11.9 0.0 4 31 1038 1065 1035 1066 0.90 14 18 8.6e-05 0.46 11.9 0.0 4 31 1105 1132 1102 1133 0.90 15 18 8.6e-05 0.46 11.9 0.0 4 31 1172 1199 1169 1200 0.90 16 18 8.6e-05 0.46 11.9 0.0 4 31 1239 1266 1236 1267 0.90 17 18 8.6e-05 0.46 11.9 0.0 4 31 1306 1333 1303 1334 0.90 18 18 8.6e-05 0.46 11.9 0.0 4 31 1373 1400 1370 1401 0.90
Sequence Information
- Coding Sequence
- ATGATGTCGGCGGTGAGCGGCACGGGCGACCAGCTGCTACGGCGCGTGAAGCAGGAGGCTGAGCCTCCGCCACAGTACTCGCCCACTGAACAGCTGACCCTGGCTTCGCCGCATCCACGCCCTATGCTTCTACAACCAGAGATGGAACTAGAGCCCAAAGAAGAGGTGAAGTTCTGCGTGTCCCCCGGCGAAGGGATCGTCGGCAACACCAGCCCGGAACAGCAGCACTGCTCGTCCACGACTGCCGCAGCCCCCAGCGCGCGAGATGACGACACGCCGAGGAGACTGTGTCTTGTGTGCGGGGACGTGGCGTCTGGCTTCCATTACGGAGTGGCCAGCTGTGAGGCCTGCAAGGCGTTCTTCAAGAGGACGATCCAGGGCAACATAGAATACACCTGTCCGGCGTCAAACGAATGCGAGATCAACAAACGGCGACGCAAGGCGTGCCAAGCGTGCCGCTTCAGAAAATGCCTGCGCACGGGCATGCTCCGCGAGGGCGTGCGTCTGGACAGAGTGCGCGGCGGCAGGCAGAAGTACAGACGCGCGCCCGaccagccgccgcccgcgccgcgcccgcaCCTCGACGACATTaagATTCTGGAAGTGCTATCATCGTATGAACCAGAGCCGTTGGCTTGCGGCACGGTGCCGGCCGGCGTGACCGAGCCCACGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTACCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTACCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTACCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTACCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTACCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTACCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCAAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTAAGACCGCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGCTGCTGGCCGACCTGTACGACCGCGAGCTGGTGGGCGTCATCAGCTGGGCCAAGCAGATACCCGGCTTCACGGACTTGCAGCTTAATGACCAGGTAAGGCCTCACACTTGGTGCCCGAGCCCGCGGCGAGGACGCTGGCGTTTCTGGCTGACTTGTATGATCGTGAAGCTGCAGTTTAATGGCCAGTTTGGTGCTAATCTATCATCACCAGGAGGTCTATCTAGAGGTGTAGCGTCAAAAAAATATCTGGGCGAACCGGTATAG
- Protein Sequence
- MMSAVSGTGDQLLRRVKQEAEPPPQYSPTEQLTLASPHPRPMLLQPEMELEPKEEVKFCVSPGEGIVGNTSPEQQHCSSTTAAAPSARDDDTPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNECEINKRRRKACQACRFRKCLRTGMLREGVRLDRVRGGRQKYRRAPDQPPPAPRPHLDDIKILEVLSSYEPEPLACGTVPAGVTEPTARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWYPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWYPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWYPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKASHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRCWPTCKTAHLVPEPAARTLALLADLYDRELVGVISWAKQIPGFTDLQLNDQVRPHTWCPSPRRGRWRFWLTCMIVKLQFNGQFGANLSSPGGLSRGVASKKYLGEPV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149446;
- 90% Identity
- iTF_00149446;
- 80% Identity
- iTF_00149446;