Atur037520.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990296.1:14057428-14058770[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9 6.7e+03 -1.5 0.1 35 44 3 12 2 12 0.84 2 2 2.6e-08 3e-05 25.3 0.0 3 31 16 44 14 44 0.95
Sequence Information
- Coding Sequence
- ATGCCGAGACATTACCAAAGAAAAACAGAGACCAAATATAAATTAGAGGACTTGGAAAGAGCTATTGAGGCTGTCAAAACTAAAACACTATCACTGGGGCAAGCAGCCACAGTTTATTCCGTCCCAAACAATATTGAGAAAGCCGCAAATGGTTTCCGGGCAGCTGGTATTTGGCCAATAGATACAACTAAATTTGACGACCAGTTTGCCGAAGTGACGTTACCGGATACTCAAATCAATCCGCAATCAAATGTTCAAAGGCCAGACGTTCAGATAGCACAGACATCTAACATGCGAGGAACAGTGTCACCTGAGGCTCAGCCAGTACCAAGATTAAATATACAGCGAACAATAGCTTCTGAGACTCAGACAGCACATTAA
- Protein Sequence
- MPRHYQRKTETKYKLEDLERAIEAVKTKTLSLGQAATVYSVPNNIEKAANGFRAAGIWPIDTTKFDDQFAEVTLPDTQINPQSNVQRPDVQIAQTSNMRGTVSPEAQPVPRLNIQRTIASETQTAH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -