Atur018546.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990286.1:25647600-25649246[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-09 4.3e-06 28.0 0.0 3 35 13 46 11 48 0.92
Sequence Information
- Coding Sequence
- ATGGAAGATAAGAAAAAGAAAGGCACATGGGATCAAACCAGTTTACAAACTGCGATTACTAAGGTTTTGTCTAAAGAACTTACTTTGAGAGAGGCTGCGTTGCGCTATAATATCCCAAAAAGCACCCTACATGATAAAACATCAGCATTGAACCTCGGACAAGAAGTGACGTTGAAACCGAAGATCGGTAGATTCACTAACACTTTTTCACCAGAGTACGAACAAATTATAGTGGATCACGTAAAAGATTTGTCTAATAGATGCCTGCCACTGATGAAAAAAGAGTTTTTAAAATTAGCTTTCGACTTGGCTGAATCTTTGAAGATCCCTCATCGCTTCAACAAGGAAAAAGGTGTTGCAGGAAAGCATTTCTACTACGATTTTATGGAGAGACATCCTGATATATCGCTGAGAGCACCAGAGTCAACAAGTATGATGCGGGCCGTCTGGTTTAACAAACCACAAGTGGATCTCTTTTATGACAATCTTGAAAGACTAACAACATTGCACAAATTTCCACCTTCCCGTATTTACAACTGCAATGAAACAGGAGTCAGCTGCGTACACAAGCATCAGAAAGTTCTTGCTCCAAACGCTGTTCGTCAAGTAGGAAAGCTTACTTCTGCCGAGAGGGGCAAAAATATAACAGtgttgttttgtatgagcgctaACGGCTACTTTATACCGCCGTTTTTCGTATTTCCGAGGCAAAGAATGAATGATCGACTCATGATTAATGCCCCAGCCGAAAGCGTAGGCGTGTCTCAGCCAAAAGGGTGGATGACTAGTGATTTCTTCCTTCAGTGGTTGCAACTATTCGTAAAACACTCGCACCCGACAAAAGAGAACCCTGTGCTGCTTCTACTGGATGGCCACTGCAGCCATAAGACACTGGCGGTCATAAATTGTTGTCGCGATAACAACATCCATTTGATAAGCTCACCGCCACATACCACCCACAAACTCCAACCCCTAGACAGAACATTCATGAAGCCATTTAAAGATGCCTATAACCAGAGATGTGACATATGGATGAGAGCAAATCCTGGGTCTCGGATAACTGACTACGATATTGCTGGTCTGGTCAATGAAGCGTTCACAAAAGTGGCTCGACTGGATATTGCGGCGTCTGGGTTCAAATGCACAGGTATTAGCCCATTTAATAGACATTTATTTACTGCCCTGGATTATTTGGCAGCTGACATGACCAATATTCCATTAGAAGAACCAGGAACTTCCTCCAACACACGGGATTGTAGCGGAATAGGTCCTGAGCCTGTCGCTGATTTAGCGTTAGCTAAAACCATATCTGAGGCTTGCAGTGCAGAATTATCCAAAGATTTGGTCTCAAAAGAATCCACGGGCCCTCCCCAAGACGCTATCAATGAGCCTAGAGTCAATTTGGTATCTGAAGAATCCACAGACCCTCCATCCAACCTAACCAATTACCCTTCTACCAAAGACACACCAATCAGCAATCCAAAACCATCGACTAGCTTTGATCCAGATGTCATTCAGATCGTCCATAAATTATCACCACTACCAGATGCTGCCAAAAAACGATCAGCTGCTCGGAAAAGAAAATGTGAAAGAAGCGAAATTTTGACATCATCTCCGTACAAATGCTGTGGAAGAAAAAGAACATGA
- Protein Sequence
- MEDKKKKGTWDQTSLQTAITKVLSKELTLREAALRYNIPKSTLHDKTSALNLGQEVTLKPKIGRFTNTFSPEYEQIIVDHVKDLSNRCLPLMKKEFLKLAFDLAESLKIPHRFNKEKGVAGKHFYYDFMERHPDISLRAPESTSMMRAVWFNKPQVDLFYDNLERLTTLHKFPPSRIYNCNETGVSCVHKHQKVLAPNAVRQVGKLTSAERGKNITVLFCMSANGYFIPPFFVFPRQRMNDRLMINAPAESVGVSQPKGWMTSDFFLQWLQLFVKHSHPTKENPVLLLLDGHCSHKTLAVINCCRDNNIHLISSPPHTTHKLQPLDRTFMKPFKDAYNQRCDIWMRANPGSRITDYDIAGLVNEAFTKVARLDIAASGFKCTGISPFNRHLFTALDYLAADMTNIPLEEPGTSSNTRDCSGIGPEPVADLALAKTISEACSAELSKDLVSKESTGPPQDAINEPRVNLVSEESTDPPSNLTNYPSTKDTPISNPKPSTSFDPDVIQIVHKLSPLPDAAKKRSAARKRKCERSEILTSSPYKCCGRKRT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772814;
- 90% Identity
- iTF_00657130;
- 80% Identity
- -