Atur006707.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990281.1:34482812-34498037[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-09 3e-06 28.5 0.0 2 35 9 43 8 49 0.92 2 2 9.7 1.1e+04 -2.1 0.0 27 36 578 588 578 589 0.88
Sequence Information
- Coding Sequence
- ATGTCTAAAAAGAGACAGTACACTAAAGAAGCCATTGAGAATGCACTGAGATTTATCCAAAATGAGGAGGGGTCTATCCGAAAAGCGTCTAAACAATTTGGTGTACCGCGGAGTAGCCTTCAATTTAAAATCCAAAATCCTAACACGAAATTTAAGTCCGGGCCGGATCCTGTACTGACTGAAGCTGAAGAGAACAAGTTGTGTGATTTTATTATACAACTGGCTAAGCGAGGGTTCCCTAGAAAGAAAGAGGACATCCAATTATGCGTGCAAGACTTTCTGAAACAAAATCCTAGACCTAATCCATTTCGAGACAATAAACCGGGAGATGTTTGGTTTAAAGCATTTCTGAAACGCCATCCCAACATATCTATACGGACGTCAGAAGGAGTAACAAATGCGAGTGCTTGTGTAAGTGAACAAGATATTAGAAAATGGTTTCAGGAGATCAAACTATATTTTGACGAGGAAGACCTAACCGAAGTGATTCGCGACTCCAGAAGAATTTTTAACGCCGACGAAACTGGATTTAATATATGTCCAAAAACCGTTATATTGTTTGTAGACGGACATAAAACACATCTGACCCTCGAAGTGTCTAACCTATGCAGAAGCCTAAGCATACATCTAATTGCGCTGTATCCGAACTCGACACGTATATTACAACCTGCAGATGTTGCCGCATTTCGTCCGATAAAAGGTGGTTGGAAAAAAGCATTACGAGAATGGTACGCTGCGAACAACTACCAAGAAAGCTTAACAAAAGAGACTTTTGCTCCGTTGCTAAAAACTGTTGTAGACTCATGTGCTAAAAAGGATACATTAATAAATGGGTTTCGTGTATCCGGTTTATTTCCATTTGATCCGGATAACGTAGATTACAGTAAATGTATTGCATCAACAACTATTCCTGAAAATTTACCTTGCAGTGAATTTGACACACAGCTGCCACAGACGAGCGCTCAGGACAACTCCATCGTGTTGACCTATACAGATTTTAGAGATATTGTAGGTAAACCCATCCTAGACAAATGCCAAGCAGCGACCCCTTCTGCTTTATTGGAAGCTGATGAAAATTTTTTGGCAATCTATAAACTATGGCAGCAATATAATGGCATCCAGAGGGCAAATGAACAAGTGAATACAGCAGATTTTGGCGAGGAAATGGATGTCAAACAGCAAAATACTCAGGGCGAAGCCGCTGAGCTAGCCGCTAGCtgtcataatatgccacttgcAGAAGGACAAGACTTTTCTAGCTTGATCCTCGACGCTGCGACGGGTGAATTTCATCGGAATGAAGTCGACAAAGACACTGAAATAGGTGAAGTTGTGGAAGAAGAATCCAGAGAGTCTCTTGTAGTAATTAGTTTAACAGAAGCTAATTATTTACAGCCAAGTTCTTCAACCCAGATTAAAGTAGACCCGCAGAAACAAATAAGAGTTATCTCAAATGTGTCATTATCTGATTATCTCAAAACAAGAACGTTACCTGAACCCCCTAAACGCAAAGGGAAGCGTCAGTCTGACAAAACCCCATTTGCACTAACGTCTGATAGTTATGTCGAAATGATAAAAGCTAAGCAGCTTAAAAAACAAGAAGAAGAATCTGCAAAACAGGAAAGAAAGAGATTACGGgaagaaaaaaaactacaaaaagaaaatatcaaTAAGAAACCTAACAAAGATTTTAATGGGAAAAGGAAAGTTACTAAAGAAAAgtatgtgttGGACGTCCCTCGGGTAACCCTGCGGCCGCGGCGCCGCGACCTGCTGGCGGTGCCGGCAGCGCGCACCGTGTCGCGCAAAAACTCGCCACTGGTGCGCGCGCTTTGTGGCGCTCAATGCGCTCCTGGCATCAGCACCGGAATGCGATCTGTTTGCATGGAGTTGGGCGCTGTGTGCTGTGAATGTTTGAGATTCTGCGAAGTGATGGATGTTAGAGAATCGAGTGTTTGTACGTGA
- Protein Sequence
- MSKKRQYTKEAIENALRFIQNEEGSIRKASKQFGVPRSSLQFKIQNPNTKFKSGPDPVLTEAEENKLCDFIIQLAKRGFPRKKEDIQLCVQDFLKQNPRPNPFRDNKPGDVWFKAFLKRHPNISIRTSEGVTNASACVSEQDIRKWFQEIKLYFDEEDLTEVIRDSRRIFNADETGFNICPKTVILFVDGHKTHLTLEVSNLCRSLSIHLIALYPNSTRILQPADVAAFRPIKGGWKKALREWYAANNYQESLTKETFAPLLKTVVDSCAKKDTLINGFRVSGLFPFDPDNVDYSKCIASTTIPENLPCSEFDTQLPQTSAQDNSIVLTYTDFRDIVGKPILDKCQAATPSALLEADENFLAIYKLWQQYNGIQRANEQVNTADFGEEMDVKQQNTQGEAAELAASCHNMPLAEGQDFSSLILDAATGEFHRNEVDKDTEIGEVVEEESRESLVVISLTEANYLQPSSSTQIKVDPQKQIRVISNVSLSDYLKTRTLPEPPKRKGKRQSDKTPFALTSDSYVEMIKAKQLKKQEEESAKQERKRLREEKKLQKENINKKPNKDFNGKRKVTKEKYVLDVPRVTLRPRRRDLLAVPAARTVSRKNSPLVRALCGAQCAPGISTGMRSVCMELGAVCCECLRFCEVMDVRESSVCT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00149331;
- 90% Identity
- -
- 80% Identity
- -