Atur026712.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990290.1:19120264-19120935[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-11 1.9e-08 35.5 0.1 3 45 17 60 16 60 0.96
Sequence Information
- Coding Sequence
- ATGCCTCGAGCTTACGTAAGAAAGACCGATAGAAGTTCTTACCCGAAAGATAAACTATTAGAAGCAGTTAGGGCCGTTAAAAGTGACGCCTTGTCAGGTTATCAAGCCTCAAAACATTATGGGATACCAAGAGCGACTATAATCAATCGCGTTTATGAGCGTAAAGGTATGAAATCAAATACTTTGGGGAAGGCCACGGTTTTATCGCGAGATGTAGAAGAAAACCTTGTCAATAATTTGCATGCAATGGAGAAGTATGGCTTCGGGTTGACGAGAAAGGAATTGATGGAGACTGTGGGACTATATGTGACAGCGAAAGGTGTGGATAATCCGTTCAAAAACGGAATTCCTGGAGAGGACTGGTTCCTTTCGTTTAAAAAACGACATAATATCTCTGTGAAAAAGCCGCAGCCGGTGGAGTATGCCCGAAAAACTGCATGCAGGCCTAATGTGATATACCCCTATTTCGATTTGCTGGAAGAAACAGTCAACCAACTAGATCTTCGCGACAAACCATCCCATATTTGGAATGTCGATGAGACAAGCTTTAGCAAAGACCCCTCAAAGGCAAAAGTGGTTGGACTGAAAGGATTTACTTCCACAAGAACGATATCATCTCCTGGGAAAGATAACACTACCGTCTTGCTGGGGTGTAATGCTCTTGGAGAATAA
- Protein Sequence
- MPRAYVRKTDRSSYPKDKLLEAVRAVKSDALSGYQASKHYGIPRATIINRVYERKGMKSNTLGKATVLSRDVEENLVNNLHAMEKYGFGLTRKELMETVGLYVTAKGVDNPFKNGIPGEDWFLSFKKRHNISVKKPQPVEYARKTACRPNVIYPYFDLLEETVNQLDLRDKPSHIWNVDETSFSKDPSKAKVVGLKGFTSTRTISSPGKDNTTVLLGCNALGE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091665;
- 90% Identity
- iTF_01280128; iTF_00825546; iTF_01091654;
- 80% Identity
- -