Atur047299.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:2067975-2068827[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-06 0.0073 17.6 0.0 10 33 5 28 4 40 0.90 2 2 4.4e-06 0.0051 18.1 0.0 10 32 81 103 72 112 0.87
Sequence Information
- Coding Sequence
- ATGCAGTGCTTCGAGGCTGTCAAGAGTGGCACCATGACCGTCCCGGAGGCTTCGGCTTACTATGGAGTGCCCCGGAAGACTGTAGCTGCTAAGATACTGAGCGATAAACGAGGAGTGCTTCGAGGCTGTCAAGTGTGGCACCATGACCGTCCCGGAGGCTTCAGCTTACTATGGAGTGCCCCGGAAGACTGTAGCTGCACCTACAAGAACTACACCAGTGATGAGCTGATGCAGTGCTTCGAGGCTGTCAAGAGTGGCACCATGACCGTCCCGGAGGCTTCGGCTTACTATGGAGTGCCCCGGAAGACTGTAGCTGCTAAGATACTGAGCGATAAACGAGGAGGTGAGTACAGCTTAGTTGAGCGACAGCACCTACAAGAACTACACCAGTGA
- Protein Sequence
- MQCFEAVKSGTMTVPEASAYYGVPRKTVAAKILSDKRGVLRGCQVWHHDRPGGFSLLWSAPEDCSCTYKNYTSDELMQCFEAVKSGTMTVPEASAYYGVPRKTVAAKILSDKRGGEYSLVERQHLQELHQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -