Atur026407.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990290.1:15993269-15993727[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4 8.5e+03 -1.8 0.1 35 44 3 12 2 12 0.84 2 2 8.2e-12 9.4e-09 36.5 0.0 3 38 16 52 14 57 0.89
Sequence Information
- Coding Sequence
- ATGCCGAGACATTACCAAAGAAAAACAGAGACCAAATATAAATTAGAGGACTTGGAAAGAGCTATTGAGGCTGTCAAAACTAAAACAGTATCACTGGGGAAAGCAGCCACAGTTTATTCTGTCCCAAAGAGTACTATATACGACTATCTCAATAAAGAAGTTATTCAGACTCCAAAATCCGGAAGAAAAGCTATATTTTCTgaacaacaagaaaaagaacTAGAGGAACACATTATAAAATGCAGTAAACAGTTTTATGGTTTAACTATTGAGATGGTCCGCAAAATTGCCTTCAAATTTgctgaaataaacaatttaaggCACAATTTTGACAAAACAACCCAAATGGCGGGAAAAGACTGGTTCTACGGATTCAAAAAAGGCACCCTGACATTTCGCTGCGTAGGCCTGAATCCACTTCTATTAATAGAATTACAGCCTTTAACGAAACTGAAGTGA
- Protein Sequence
- MPRHYQRKTETKYKLEDLERAIEAVKTKTVSLGKAATVYSVPKSTIYDYLNKEVIQTPKSGRKAIFSEQQEKELEEHIIKCSKQFYGLTIEMVRKIAFKFAEINNLRHNFDKTTQMAGKDWFYGFKKGTLTFRCVGLNPLLLIELQPLTKLK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -