Basic Information

Insect: Apotomis capreana
Gene Symbol: -
Assembly: GCA_947623375.1
Location: OX392522.1:13875236-13878616[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.55 51 5.6 0.1 3 23 89 113 87 113 0.88

2 13 0.55 51 5.6 0.1 3 23 148 172 146 172 0.88

3 13 0.55 51 5.6 0.1 3 23 207 231 205 231 0.88

4 13 0.55 51 5.6 0.1 3 23 266 290 264 290 0.88

5 13 0.55 51 5.6 0.1 3 23 325 349 323 349 0.88

6 13 0.55 51 5.6 0.1 3 23 384 408 382 408 0.88

7 13 0.55 51 5.6 0.1 3 23 443 467 441 467 0.88

8 13 0.55 51 5.6 0.1 3 23 502 526 500 526 0.88

9 13 0.58 53 5.6 0.1 3 23 562 586 560 586 0.88

10 13 0.55 51 5.6 0.1 3 23 621 645 619 645 0.88

11 13 0.55 51 5.6 0.1 3 23 680 704 678 704 0.88

12 13 0.52 48 5.7 0.1 3 23 739 763 737 763 0.88

13 13 0.0015 0.13 13.7 1.0 2 23 773 795 772 795 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.55	51	5.6	0.1	3	23	89	113	87	113	0.88
2	13	0.55	51	5.6	0.1	3	23	148	172	146	172	0.88
3	13	0.55	51	5.6	0.1	3	23	207	231	205	231	0.88
4	13	0.55	51	5.6	0.1	3	23	266	290	264	290	0.88
5	13	0.55	51	5.6	0.1	3	23	325	349	323	349	0.88
6	13	0.55	51	5.6	0.1	3	23	384	408	382	408	0.88
7	13	0.55	51	5.6	0.1	3	23	443	467	441	467	0.88
8	13	0.55	51	5.6	0.1	3	23	502	526	500	526	0.88
9	13	0.58	53	5.6	0.1	3	23	562	586	560	586	0.88
10	13	0.55	51	5.6	0.1	3	23	621	645	619	645	0.88
11	13	0.55	51	5.6	0.1	3	23	680	704	678	704	0.88
12	13	0.52	48	5.7	0.1	3	23	739	763	737	763	0.88
13	13	0.0015	0.13	13.7	1.0	2	23	773	795	772	795	0.97

Sequence Information

Coding Sequence: ATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTACTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGCGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGAGTGAGTCCTCGTCTACTGTATGTGGAGGCGTCTCCTGCACCGCGCCTGAGCAGTGTCCCGCCATGTTCCAGACCAGCCGCGGCCTGCGCCTGCACAGGATCAACAAGCACATGGACAAGCGAGACCGGCAGCTGCAGCAGTGCGGGCAGTGCGCGCGCGAGTGCACGACGCCGGCGCTGCTGCGCCAGCACATCCGCCGGATGCACACCGACCGCACTAAGAGGTGA
Protein Sequence: MWRRLLHRACAVSRHVPDQPRPAPAQDQQAHGQARVSPRLLYVEASPAPRLRSVPPCSRPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSYCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPAQCPAMFQTSRGLRLHRINKHMDKREPAAACACTGSTSTWTSESESSSTVCGGVSCTAPEQCPAMFQTSRGLRLHRINKHMDKRDRQLQQCGQCARECTTPALLRQHIRRMHTDRTKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -