Acap013712.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392520.1:229322-243835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.93 85 4.9 2.4 3 20 308 325 307 327 0.91 2 10 5.6e-05 0.0051 18.2 1.2 1 23 332 354 332 354 0.99 3 10 7.2 6.6e+02 2.1 0.2 2 12 361 371 360 372 0.87 4 10 0.015 1.4 10.5 1.5 3 23 373 393 371 394 0.94 5 10 6e-05 0.0055 18.1 3.4 1 23 400 422 400 422 0.97 6 10 0.00026 0.023 16.1 3.0 1 23 428 450 428 450 0.98 7 10 1.1 1e+02 4.6 0.0 1 16 456 471 456 472 0.87 8 10 1.2 1.1e+02 4.6 2.3 3 20 610 627 609 629 0.90 9 10 5.6e-05 0.0051 18.2 1.2 1 23 634 656 634 656 0.99 10 10 3.5 3.2e+02 3.1 0.2 2 13 663 674 662 676 0.89
Sequence Information
- Coding Sequence
- ATGGCAAGGCAACAAGGCCAAGAATTTGAAGATGCGCCGAGCGCTCCAGTACTGGTACCGTTACAAGATGGCGCGGGCAGTGGTGCGGTAGATCGAGTTTCTGTTCGCCTTCCTCCTTTTTGGCCGGACGACCCCGAGATTTGGTTTGCTCAGGTGGAAGCCCAATATCAGATCGCGGGAACGAAGACGGACGCGACCAAGTTCTATACGGTGATCCAGCAGCTCGACCAGAACATTGCCAGGGAAGTACGCGATGTCATCACAAACTCACCTACGCAAGGCAGGTATGAGAAATTAAAATTAGAACTGGTGCGACGGCTATCGATGTCACGTGACGAACGCTTGCGGAAGCTTCTAGTAAAAGAGGAGTTAGGGGATTTAAAACCTTCCCAATTCCTCCGCAAATTACAATCGCTTGCGGGGTCTGCTGTAAGTGACGAGTTTTTAAGATCGCTGTGGTCGAGTCGAGTCACGCTCTCGACGCTCGGTGGTTTACGTTGTCGGGTGCGCTTGTCGCGTCTATCGTCGTGTCGCTCGTGTGGCGCGCCTGTCGCCTGCGCGGGTAGCGTGGCACACACATGCGCTCGCGACACGCGACACGCGCGCGACGCGCCGCGGGCCGACGCCGTCAGACGCCGCCTCGTAGCCACAGCGCGCCACCAGACAAACGAGCGCAACGAAAGTGGCGCGCGCCCGAGCGACAGACGGGGTAGAAACAGGCCGGAATCTGTCCATAAAAATGAAGATGCCTTGACTCCACATCGTGCGCCAAACATACGTACTGCTGGAGAACCTCGTATAAGGAAAAGGAAAGTTGCTACTAGTAAGATTTCCGATAGCGCCAATTTGAGTTTTAGTAACACCTCTTCAATAGTGAGTCCCTGTCGGCGCGGAGTGCCGGCCGGCGCGCAGCCTCGCGCCTGCGGAGCCTGCGGCCGACGATTCCAATACAAGCATCACTTCGACGCGCACACGTGCGCCCCGCCCGGCCCTTACACCTGCGACGTGTGCAAAAAGCTGTTCATGCAAAAACGCACACTGGAAAATCACATCAAAGTACATGCAGAGCGGAAACCTGATTACTGCGAAGTTTGCAACGAAGAGTTTCCCAACAATTGTGAATACTGTAGCAAGCGATTTATAACCAAACAAAGCAAAGTGCTGCACGAGCGGAACCACCACACGGGCGACAAACCCTACTGCTGCGGTGTGTGCCACAAGGCGTTTGCGAAAAAGAGCTCCCTCACCGTGCACAGCAGGATACACACAGGATATCGACCATTTTCTTGCGAAGTTTGTTATAAAAATTTTATTACTAGAACGCATTTAGAAACCCATAAAAACATTCACACCGGAGAAAAACTTTACAGTTGTGAACAATGCGGAGTCACGCTCTCGACGCTCGGTGGTTTACGTTGTCGGGTGCGCTTGCCGCGTCTGTCGTCGTGTCGCTTGTGTGGCGCGCCTGTCGCCTGCGCGGGGAGCGTGGCACACACATGCGCTCGCGACACGCGGCACGCGCGCGACGCGCCGCGGGCCGACGCCGCCAGACGCCGCCTCGTAGCCACAGCGCGCCACCAGACAAACGAGCGCAACGACAGTGGCGCGCGCCCGAGCGACAGTCGCGGTGGAAACAGCCCGAAATCTGTCCATAAAAGTGAAGATCATCGAGCGCCAAACATACACACTGGTGGAGAACCTCGTATAAGGAAAAGGAAAGTTGCTACTAGTAAGATTTCCGATAGTGCCAATTTGAGTTTTAGTAACACCTCTTCAATAGTGGGTCCCTGTCGGCGCGGAGTGCCGGCCGGCGCGCAGCCTCGCGCCTGCGCAGCCTGCGGCCGACGATTCCAATACAAGCATCACTTCGACGCGCACACGTGCGCCCCGCCCGGCCCTTACACCTGCGACGTGTGCAAAAAGCTGTTCATGCAAAAACGCACACTGGAAAATCACATCAAAGTACATGCAGAGCAGAAACCTGATTACTGCGAAGTTTGCAATGAAGAGTTTCCCAACAAAGGAAGGGCACAGGGCAGCCCTCGCCGCTGTGAGCGTGCGCACGCGCCGGCGGCGAGCGATCCACAGCGGCCGGGGCGGGGAAGAGGGGAGCTGAGTTGCGGCGAGCGGGGTCTGCCGCAGGGCATCGGCTGCACTTCCCACAGCGCCGGAAGGGCGGTTCCACGGAAAGTTCCGTCTGTTTTTTAG
- Protein Sequence
- MARQQGQEFEDAPSAPVLVPLQDGAGSGAVDRVSVRLPPFWPDDPEIWFAQVEAQYQIAGTKTDATKFYTVIQQLDQNIAREVRDVITNSPTQGRYEKLKLELVRRLSMSRDERLRKLLVKEELGDLKPSQFLRKLQSLAGSAVSDEFLRSLWSSRVTLSTLGGLRCRVRLSRLSSCRSCGAPVACAGSVAHTCARDTRHARDAPRADAVRRRLVATARHQTNERNESGARPSDRRGRNRPESVHKNEDALTPHRAPNIRTAGEPRIRKRKVATSKISDSANLSFSNTSSIVSPCRRGVPAGAQPRACGACGRRFQYKHHFDAHTCAPPGPYTCDVCKKLFMQKRTLENHIKVHAERKPDYCEVCNEEFPNNCEYCSKRFITKQSKVLHERNHHTGDKPYCCGVCHKAFAKKSSLTVHSRIHTGYRPFSCEVCYKNFITRTHLETHKNIHTGEKLYSCEQCGVTLSTLGGLRCRVRLPRLSSCRLCGAPVACAGSVAHTCARDTRHARDAPRADAARRRLVATARHQTNERNDSGARPSDSRGGNSPKSVHKSEDHRAPNIHTGGEPRIRKRKVATSKISDSANLSFSNTSSIVGPCRRGVPAGAQPRACAACGRRFQYKHHFDAHTCAPPGPYTCDVCKKLFMQKRTLENHIKVHAEQKPDYCEVCNEEFPNKGRAQGSPRRCERAHAPAASDPQRPGRGRGELSCGERGLPQGIGCTSHSAGRAVPRKVPSVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -