Acap033344.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392523.1:1626716-1647790[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.01 0.96 11.0 7.1 1 23 242 264 242 265 0.95 2 17 0.0094 0.86 11.2 1.6 2 23 273 294 272 294 0.98 3 17 0.62 57 5.5 1.9 1 23 298 320 298 320 0.97 4 17 0.0065 0.59 11.7 1.5 1 23 325 348 325 348 0.92 5 17 0.056 5.2 8.7 0.2 2 23 354 376 353 376 0.93 6 17 0.046 4.3 9.0 0.1 2 20 388 406 387 408 0.91 7 17 0.079 7.2 8.3 0.1 3 23 421 442 420 442 0.94 8 17 0.0082 0.75 11.4 0.3 2 23 448 470 447 470 0.95 9 17 4 3.7e+02 2.9 0.5 2 14 493 505 492 509 0.80 10 17 3.1 2.8e+02 3.3 0.7 2 14 516 528 515 532 0.80 11 17 4 3.7e+02 2.9 0.5 2 14 539 551 538 555 0.80 12 17 4 3.7e+02 2.9 0.5 2 14 562 574 561 578 0.80 13 17 2.6 2.3e+02 3.5 0.4 2 14 659 671 658 673 0.84 14 17 3.2 2.9e+02 3.2 0.8 5 23 809 827 808 827 0.92 15 17 0.05 4.6 8.9 2.6 3 23 835 855 834 855 0.99 16 17 4.4e-06 0.00041 21.6 4.2 1 23 861 883 861 883 0.97 17 17 5.5e-05 0.005 18.2 0.6 1 23 889 912 889 912 0.95
Sequence Information
- Coding Sequence
- ATGAGGCCCGTAAAAGAAGAAAATGCCAGTAGCAAAGAAAAATTGCTAGCTTGCCGATTTTGCCTCGCTACAGGAGTGAATCTCTTCAGTATACACGAAAATGGGCTGGAAAAACAGTTTCGCGATATTTTAGGGACAGTGGTATCTTTGTCAGATGGGTTGCCCCAGCAAGTATGCGTCTGGTGCATGCGACTGGTGAGAAAGTTTGAGGAGTTCAGGGCTCGCACCCAAAGGAGCCAGGAGCTGCTGAACACTCTCAAGGAACAGAATACCATAACCACTGACGTCATCACTAGCATAGACCGCGACTCCCACCAGCTCGCCCTACGCCTCACCTCCCAAACCAACACAGCACTGATTGAATGTGAGCACCAGGAACACCAGGACCTGGTGGTGAAGTCTGAAGTGATCAAGACCGATGAAACAAATGAAGTCGAAGATATTGTGAAATATGAAGACTTAGAGGATGATATAGATGTAGATGATGATTACGAGGTAGAGATAAAGAAGTTAAGTAAGAGAAGGAAAAAGGTGGTTCAGAAAGAAGTTAAGAAGAAGTTGCCTAAAGTTAAAGAGAAAAAGATCAAAAAGATGTTCGACTGCGAAGAGGACTTCCCCAAATTCGAGAGCAAGTACAACATGGAGATAGTGGTGCTGACGGTGGAGCAGCAGCGAGAGAACATGTCCGCCAGGAGACACTCCTCCAACTACACCAACTCCCCGCACAAGTGCCCGCTGTGCTTCAAGGGGTTCTCCTCCGAGGCCACCTTCCGGAACCACCACTTGAAGCATCATGACCCGAGCGTGGGCGCGCAGCAGTGCGAGCTGTGCCACTCGCGGTTCCGCATCCCCGCGTTCTTGCGCACGCACATGGAGACGCACCGGCTCAAGTTCGTGTGCAGGGACTGCCGGTTCGTGGCCAGCAACCGGTACCACGCCATAACGCATTTCCGCGAGCACAGCGGGTTCAAGTACGTCTGCAAGTACTGCGGCGCCACCTTCAAGAAGCCGTCGACGCACGGCACGCACGTGCGCATCCAGCACCCCGCGGAGAACACGTCCTGCGACGTGTGCGGGGAGACCTTCCAGGGGGAGTTCGGGCTGCGCATGCACAAGACGAGAGCGCACAAACTGGACTCTGAAAACGAGTCTGGATCGTTAAACTGCAGTACGTGTGGTGTGCAGTTCGCGAGCTCGTACGCCATGGCGAGACACACATTCACGGCGCTGGACAACACATGCAACCCGGGTATTAGAGCGTGCACTCTGTGTGGAGAAAACCTGGCGACAGAGGAGTTACTGCGGAGCCACACGCAGGAGAGACACAGCAAGCCGGAGACAAGGTGCGACGAGTGCAACAAGACATTCCTGACCGAGGCGTCACTCAGCGTCCACTACGAGCGAGTCCATCTGCAGGTGAAGAGTGTGCGGCGGAAGGCGGCGCACCACGCGCGCAAGCAGTACGGCGGCGTCGTCATGTGCGAGCTGTGCGGGAAGCGGTGCAAGGCGGCGCACCACGCGCGCAAGCAGTACGGCGGCGTCGTCATGTGCAAGCTGTGCGGGAAGCGGTGCAAGGCGGCGCACCACGCGCGCAAGCAGTACGGCGGCGTCGTCATGTGCGAGCTGTGCGGGAAGCGGTGCAAGGCGGCGCACCACGCGCGCAAGCAGTACGGCGGCGTCGTCATGTGCGAGCTGTGCGGGAAGCGGTGCAAGGCGGCGCACCACGCGCGCAAGCAATACGGCGGCGTCGTCATGTGCGAGCTGTGCGGGAAGCGGTGCAAGGTTGGTGACTCCTGGCCAACTCTGGTAGCCTGGTACTTGCGCCCCCAAAACTGGCGTCCGTTTAATCTGAAAACTCTTAGGAAAATGTGGAGGGTGAGCTCCTGTTCTGGTAGCCTGCTACTTGCTTTTGAAGTGAAGAGTGTGAGGCGGAAGGCGGCGCACGACGCGCGCAAGCAATACGGCGGCGTCGTCATGTGCGAGCTGTGCGGGAAGCGGTGCAAGGTTAGTGACTCCTGGCCAGCTCTGGTAGCCTGTTCTGGTAGCCTGCTACTTGCTTTTGAAATGAAGAGTGTGCGGCGGAAGGCGGCGCACCACGCGCGCAAGCAATACGGCGGCGTCGTCATGTGCGAGCTGTGCGGCAAGCGTTCTGGTAGCCTGCTACTTGCTTTTGAAGTGAAGAGTGTGCGGCGGAAGGCGGCGCACCACGCGCGCAAGCAATACGGCGGCGTCGTCATGTGCGAGCTGTGCGGCAAGCGGTGCAAGGTTGGTGACTCCTGGCCAGCTCTGGTAGCCTGGTACTTGCTCCCTCAAAACTGGCGTTCGATTGATCTGAAACCTCTTCGGGAACTGTATGTGAAGAGTGTGAGGCGGAAGGCGGCGTACCACCCGCGCAAGCAATACGGCGGCGTCGTCATGAGCGAGCTGTGCGGGAAGTGGTGCAAGAACAGCACGATCCTGAAGTACCACCAGCGCACGCACACCGGCGAGAAGCCGCACGGCTGCCCGCGCTGCCCGAAGCGGTTCGTGTCCCCCATGTTGCTGCACTGTCATCTGCGGTCCCACACCGGCGAAAGACCCTACAAATGTACGCAGTGTCACAAGTCGTTCACACAAAAATCGGCGCTCACTGTGCATAAAACGGTCCACACAGGAGAGAAGCCTTTCGCCTGCTCCATCTGCGGCAAATCCTTCACACAGGCGGCCTCCGTGCACACGCACGTCAAGTACGTGCACATGAAGATTCCCGCCCCGCCTCGACGGAGGAACTTGAAGAAAGAGTGA
- Protein Sequence
- MRPVKEENASSKEKLLACRFCLATGVNLFSIHENGLEKQFRDILGTVVSLSDGLPQQVCVWCMRLVRKFEEFRARTQRSQELLNTLKEQNTITTDVITSIDRDSHQLALRLTSQTNTALIECEHQEHQDLVVKSEVIKTDETNEVEDIVKYEDLEDDIDVDDDYEVEIKKLSKRRKKVVQKEVKKKLPKVKEKKIKKMFDCEEDFPKFESKYNMEIVVLTVEQQRENMSARRHSSNYTNSPHKCPLCFKGFSSEATFRNHHLKHHDPSVGAQQCELCHSRFRIPAFLRTHMETHRLKFVCRDCRFVASNRYHAITHFREHSGFKYVCKYCGATFKKPSTHGTHVRIQHPAENTSCDVCGETFQGEFGLRMHKTRAHKLDSENESGSLNCSTCGVQFASSYAMARHTFTALDNTCNPGIRACTLCGENLATEELLRSHTQERHSKPETRCDECNKTFLTEASLSVHYERVHLQVKSVRRKAAHHARKQYGGVVMCELCGKRCKAAHHARKQYGGVVMCKLCGKRCKAAHHARKQYGGVVMCELCGKRCKAAHHARKQYGGVVMCELCGKRCKAAHHARKQYGGVVMCELCGKRCKVGDSWPTLVAWYLRPQNWRPFNLKTLRKMWRVSSCSGSLLLAFEVKSVRRKAAHDARKQYGGVVMCELCGKRCKVSDSWPALVACSGSLLLAFEMKSVRRKAAHHARKQYGGVVMCELCGKRSGSLLLAFEVKSVRRKAAHHARKQYGGVVMCELCGKRCKVGDSWPALVAWYLLPQNWRSIDLKPLRELYVKSVRRKAAYHPRKQYGGVVMSELCGKWCKNSTILKYHQRTHTGEKPHGCPRCPKRFVSPMLLHCHLRSHTGERPYKCTQCHKSFTQKSALTVHKTVHTGEKPFACSICGKSFTQAASVHTHVKYVHMKIPAPPRRRNLKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -