Acap023178.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392521.1:13962982-13989090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.14 13 7.5 0.0 3 23 250 271 249 271 0.95 2 23 0.0005 0.046 15.2 1.5 1 23 341 363 341 363 0.97 3 23 0.00026 0.023 16.1 0.7 1 23 367 390 367 390 0.98 4 23 0.029 2.7 9.6 0.6 2 22 396 416 395 416 0.95 5 23 0.0039 0.36 12.4 1.0 1 23 423 446 423 446 0.98 6 23 0.03 2.7 9.6 0.7 2 23 454 476 453 476 0.95 7 23 0.35 32 6.2 4.0 2 23 482 503 481 503 0.96 8 23 0.26 23 6.7 1.1 2 23 569 590 568 590 0.89 9 23 6.9 6.3e+02 2.2 0.0 1 15 612 626 612 629 0.85 10 23 0.16 15 7.3 0.8 2 23 654 676 653 676 0.92 11 23 6.8 6.2e+02 2.2 0.4 2 23 725 747 724 747 0.90 12 23 3.3 3e+02 3.2 0.0 3 20 780 797 779 799 0.92 13 23 0.1 9.5 7.9 2.1 1 23 898 921 898 921 0.97 14 23 0.0053 0.49 12.0 0.3 2 23 1088 1109 1087 1109 0.96 15 23 0.057 5.3 8.7 0.5 1 21 1113 1133 1113 1134 0.94 16 23 0.74 68 5.2 0.1 1 23 1175 1198 1175 1198 0.93 17 23 0.3 27 6.5 0.2 2 23 1224 1246 1223 1246 0.95 18 23 0.018 1.7 10.3 0.3 2 23 1270 1291 1269 1291 0.94 19 23 0.00018 0.017 16.6 0.0 1 23 1295 1318 1295 1318 0.97 20 23 0.014 1.3 10.7 0.5 1 23 1322 1345 1322 1345 0.98 21 23 6.6 6e+02 2.2 1.3 1 23 1350 1375 1350 1375 0.89 22 23 0.17 16 7.2 5.7 1 22 1384 1405 1384 1407 0.88 23 23 0.0074 0.68 11.5 0.2 1 23 1417 1440 1417 1440 0.96
Sequence Information
- Coding Sequence
- ATGCCGCCGCGCTCGGATCTCTCCCTCAACCGCTTGCCGCGCCGCTGGTCGCGCACGACGCGTTGCGTTGCGTTTGCGCCTTGTAAAGTTTGTAGTCTCGTGACTAAAAGCCGACAGTGGGAAAGAGGCGCGGATGAAACGCGCACCCGCGAAAAATATATTGCATTTGCTCATACAACCGGGCCGAACAGCAACAGCAGACTCATCTGCGAGCCGTGTATATCCCGGTTGCGGGACGCTTCAGAGTTCAAGCGACAGGTCCAGGAGTGCGAGAAAATGTTCATGCAGTACCTCGACCCGGGGCGGATCACCTTAGACAGCGTGGTGGAGAGTACCCCAGAGCCATTGGAAAAGGAAGTAAAGCTCGAACGCGTCAAACTAGAGAAGGGCCAGAGCGACGACGACTTTGACGACCGGGGCGGCTTCGACGACATGGACGACGACGATCTCGACGACCAGCCCCTAACAAAGCTCGCCAGCAAAGTGCCTAAAAAGGAGTCAGTCGACCTCCTCGACCTCCTCGACAACGCCAAGGTGGCGGAGAAGAGGAAATCCTCCGCCAAGGCTAAAGCGAGTCCCGCGAAGAAGGCTAAAACGAAGAAGGACACGCCCAAAGCCACGGCCAGCAAGGCTAAGCCTGAGAAGAAGAAGAAAGACAAGACATACGATCCGGCGCGAAGTAACGCCGAAACCATCCTAACATGCGCCACGGCGTACCCGTTCCGCGTCACAGACAAGAGCATACTGTGCGTGTACTGCCTCGAAGTGTACGACGACCCCCCGCTCTTCCGCAAACACATGCAAGACGAGCACAGTAGCTTCACTCTCAAAGTCGCCTTCCACAACCTACCCAGCCTAGAGTTCATTAAAGCGGACATCACCGACCTGAAATGCAGATTATGCTCCCAAAAACACCAAACCCTAGAATCAATCGCGGATCATTTGCACACGCAACACGAGCGAAACATAGACGCGAACGGAAAACTGGGAGTCATGCCTTATTTACTACACAAAGATGTATATAATTGCGCCGTATGCGAAAAGAACTTCCCGTCGCTGTTCCATCTGAACAGACACACGATATCACACTTCCTGAGCTACGTTTGCCACGTGTGCGGGAAGAGCTACGTGGCAACGACCGGCCTGCTACGCCACGTCCGGTCCAAACACCAGCAGTACGAAGTGACCTGCAAGAAGTGCCGGAAAGTCTTCCCGAACATGGAAGCGAAAGAAAAACACACTAGAACTGAGAAGTCTTGCATGCCCTACGTGTGTCAGAAGTGCAATGAGCGATTCCTGGATTGGAAATCGAGGAAACGGCACATGGAGACTGCCCATGGACAGACGAAAAAGTCCCTTAGGTGTGCGGATTGCAATATAAGTTTCAATACTGAAAACTCCTATTACGAACATTTTAAGATGCAGCATTCTGGAGAGTGTTCTTCTTGTAAACATTGCGGTTTGAAGTTTTTGTTCACGTCCCGGTTGAAACGGCATCTGGCTAAGCATAACTTGTCCAAGCAAGCGTGGAACAGGCACCTGGTCACGCACGACGACACTAAAAAGGCTGCTTGTCCGGTGTATGTGTACGAAGACCCTCAAGAGTTCAGGGAACATGTAGATTCACTTCATGCCTATATTGACAAGTCCGATCTTAGACACTATGATTCTGATACCTCGCTGCGCGTAGATATAACTGGCTTGCACTGCAAAATTTGTTACGCAGAATTCAACAATCTAGATAAATTGAAGGAGCATTTTGTTGAACATGACCTCAACGTGGCCGTCGCAGAACAAACTGGTCTGGTGCCGCTACGGCTGGATAAGAACAGTTTCGTCTGTGTCATATGCGAAAAAGTCTTGCCAGACAACGATGCCTATCTCAACGCGAAACGGAACGCCGAGATTATCGTGAAATATTCGACAGCGTACCCGTTCCGACTTCCCGAGAGTGCCATGGTTTGTGTGTACTGCTGTGAGAGTTTCGATGACCCCACTCTCTACAGAAAACATATGAGTGACGATCACCAAACGTTCAAAGTGCGCATGGCTTTCGTTCACTGCAGCGAAGACAAAAAATCGGTCTCCAATGCTACCATCGAGAGACGAAACGCCGAGTTAATAGTCCAATACGCGACCGCGTTCCCCTTCCGGCTCCCTGAGAAGCTGTTGGTGTGCGTGTATTGCTGCGAGCAGTTCGAAGATCCCTTGCTCTTCAGACAGCATATGGATGACGAACACCAACAGTTCAAAGTCGCGATGGCTTTCGTCCACGTATCTGATGGCGATCTGAAAGTCGACTGCACCGATTTGCGGCTGCGCTCCAAGTCGATGTTTTGCGTGTACTGCGACGATGAGTTCGAAGACCCGGCGGAGTTTCGGACGCATGCGCACTCGTGTCAGCGCTCCTTCACCTTCGCCACTTCCTTAGCGTACAGTCTCCGCAACCAGGAGTACATTAAAGTCGAGTGCACCAACATGGGTGGTCCACTGCTTGTCCATTTAGAACATGGAAAAGTAACTTTAGCTGTGTGTTTTGCCGCGTACAAACCAGCGATCCAAGCGGTCTTAGGAGCCACGTGGCAACACATCACGCCAATTATCACGTACAAGACGCATTTTATAGAAAACTTGGGTTTTATCACGGAATCTGCGATGATCGCGCACACCAAGATACCTCACGAGAACAAATATAACTGCAGTCGTTGCGTGGCTACGTTCTCTTCTCTCGACGAGAGAAATCATCACGTGAAAACACAGCACACGAATACACCTTATATGTGCAACTACTGCAAAGATAAGCCCCGTTTCTCCAATTGGGAGTTACGGCCCAGTAAGGAAATAGCGGGACATACTGAGACAGAACGTAAAACGAAAAAGAGACTGTTTGAACGATCTGTTAACCAGAACCCGCAACGACAAAACGCTGTTCTAATACTTAAGCACTCTACAGCCTTCCCCTTTAAGACTCGATTTAATAGAATTGTCTGTTCGTACTGCCATGACGAGTTTGAACCGATGACGGCGTTGAGGTGTCACATCAAAACCGACCACGTCAGCGCTGATCACAACAGCGCCTTTTACAAGGTGGTTGACGATTTGAAAATCGACATAACAGAATTCAAATGTAACCTATGTTCCCAAGAAATGCTGAGCATTGAAGTCTTTATGAACCACTTGTCTCGCGATCACGGAAAAACTGTCAACTTTGACGTGCCTTTTGGAGTGCTGCCTTACAAGCAGGGTCCGTCCGGCCTGTGGATGTGTCTAGACTGCGACAAAACTTACTCTGAATTCTCACAAATCAACGGCCATTTGCGCAGTCACGTAAAAATATTCACTTGCGATAAATGTGGAGCTACTTTCCTTTCTGAACATGGCTTACGGCAGCACGAACGGAACTTTAAATGCTACAAAGCCACGTATAAACCTCGATTTGGGAAGGCGTTGAAGCATCGTAGCAACACTGAAATTATATTGCAGTGCTCCACTGCGCGTCCGTTCAGGACTTGGGGCCAGAACTTCAACTGTGTCTATTGCCGCGTACAATCCAACGATCCTAATGGTCTAAGAATGCACATGGCAGCGAGACACGCTAATACGAATATCCAACACGTCTTCAGTCGAAAACTAAGAAAAGAGTTTCTTAAGGTCGATATCACTGATCTACAGTGCAAACTATGCTATTTAAGAATAGACACTCTAGATGATCTTATTACACATCTTAAAAACGATCATAAGCAGCCGATCAACGCCGATGTGCAACCGGGCGTGCTGCCTTTTAAATTAAACGATGGATCTCACTGGAAGTGCGCCATATGTACGTTACAGTTCTCAGATTTCATCTCTTTAAAAAAACACACCGCTGAACACTATCAGAACTTCGTCTGCGATACTTGCGGTGAAGGATTCATCACGGAATCTGCGTTGGTAGCCCATACAAAGATTCCGCATGACAACAAATACAGCTGCAGTCGTTGTGTGGCAACATTCTCTACTTTAGAAGAAAGGAACGTACACATTAAAACGCAACATACAACGCTTCCGTACATGTGTGCGCATTGTAAAGAGAAACCCCGCTTTGCGACGTGGGAGCTGCGCAAGCGCCATCTCATGGAGTTCCATAACTACAAGCCGGGCGCCGAAATGTACGAGTGTACTACCTGTCATATGACTTTCAAGACGAGATCCCAAAAGTATCACCACAATGTGAAAGCCCATAGGACTAAGAAAGATACGGAATATGGGTATCCGTGTGGAAGTTGTTCTAGAGCATTCGCTACTAAATTGTCTTTGGATAAACATATCGCTAAGAAACATTTTCATGTTTGA
- Protein Sequence
- MPPRSDLSLNRLPRRWSRTTRCVAFAPCKVCSLVTKSRQWERGADETRTREKYIAFAHTTGPNSNSRLICEPCISRLRDASEFKRQVQECEKMFMQYLDPGRITLDSVVESTPEPLEKEVKLERVKLEKGQSDDDFDDRGGFDDMDDDDLDDQPLTKLASKVPKKESVDLLDLLDNAKVAEKRKSSAKAKASPAKKAKTKKDTPKATASKAKPEKKKKDKTYDPARSNAETILTCATAYPFRVTDKSILCVYCLEVYDDPPLFRKHMQDEHSSFTLKVAFHNLPSLEFIKADITDLKCRLCSQKHQTLESIADHLHTQHERNIDANGKLGVMPYLLHKDVYNCAVCEKNFPSLFHLNRHTISHFLSYVCHVCGKSYVATTGLLRHVRSKHQQYEVTCKKCRKVFPNMEAKEKHTRTEKSCMPYVCQKCNERFLDWKSRKRHMETAHGQTKKSLRCADCNISFNTENSYYEHFKMQHSGECSSCKHCGLKFLFTSRLKRHLAKHNLSKQAWNRHLVTHDDTKKAACPVYVYEDPQEFREHVDSLHAYIDKSDLRHYDSDTSLRVDITGLHCKICYAEFNNLDKLKEHFVEHDLNVAVAEQTGLVPLRLDKNSFVCVICEKVLPDNDAYLNAKRNAEIIVKYSTAYPFRLPESAMVCVYCCESFDDPTLYRKHMSDDHQTFKVRMAFVHCSEDKKSVSNATIERRNAELIVQYATAFPFRLPEKLLVCVYCCEQFEDPLLFRQHMDDEHQQFKVAMAFVHVSDGDLKVDCTDLRLRSKSMFCVYCDDEFEDPAEFRTHAHSCQRSFTFATSLAYSLRNQEYIKVECTNMGGPLLVHLEHGKVTLAVCFAAYKPAIQAVLGATWQHITPIITYKTHFIENLGFITESAMIAHTKIPHENKYNCSRCVATFSSLDERNHHVKTQHTNTPYMCNYCKDKPRFSNWELRPSKEIAGHTETERKTKKRLFERSVNQNPQRQNAVLILKHSTAFPFKTRFNRIVCSYCHDEFEPMTALRCHIKTDHVSADHNSAFYKVVDDLKIDITEFKCNLCSQEMLSIEVFMNHLSRDHGKTVNFDVPFGVLPYKQGPSGLWMCLDCDKTYSEFSQINGHLRSHVKIFTCDKCGATFLSEHGLRQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTARPFRTWGQNFNCVYCRVQSNDPNGLRMHMAARHANTNIQHVFSRKLRKEFLKVDITDLQCKLCYLRIDTLDDLITHLKNDHKQPINADVQPGVLPFKLNDGSHWKCAICTLQFSDFISLKKHTAEHYQNFVCDTCGEGFITESALVAHTKIPHDNKYSCSRCVATFSTLEERNVHIKTQHTTLPYMCAHCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKDTEYGYPCGSCSRAFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -