Basic Information

Insect: Apotomis capreana
Gene Symbol: rn
Assembly: GCA_947623375.1
Location: OX392522.1:12153808-12164824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.91 83 4.9 0.1 8 23 41 56 40 56 0.92

2 6 1.1e-06 0.0001 23.5 0.4 1 23 63 85 63 85 0.98

3 6 8.5e-08 7.8e-06 27.1 3.9 1 23 91 113 91 113 0.99

4 6 0.00025 0.023 16.1 2.6 1 21 119 141 119 143 0.94

5 6 0.0063 0.58 11.7 5.3 1 20 149 168 149 171 0.93

6 6 2.5e-06 0.00023 22.4 3.5 1 23 180 202 180 202 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.91	83	4.9	0.1	8	23	41	56	40	56	0.92
2	6	1.1e-06	0.0001	23.5	0.4	1	23	63	85	63	85	0.98
3	6	8.5e-08	7.8e-06	27.1	3.9	1	23	91	113	91	113	0.99
4	6	0.00025	0.023	16.1	2.6	1	21	119	141	119	143	0.94
5	6	0.0063	0.58	11.7	5.3	1	20	149	168	149	171	0.93
6	6	2.5e-06	0.00023	22.4	3.5	1	23	180	202	180	202	0.97

Sequence Information

Coding Sequence: ATGGTGTCGAGCAGTGGCGATAAGCGCGGACGGAAAAAGACCATTTCTGACACCGAGTTTGGGGTCCCGCGGGGCGCTGGTGACCCCGCCGAATGGGGTCTGCTGGAGGCCTCTGACCATGAGGTGttcggctccaaggcagacctgcagctgcacacgcagatccacctccgcgaagccaagccctaccgctgcacccagtgcccgaaggctttcgccaactcctcgtacctcgcgcagcactcccgcatccacctcggcatcaaaccgtaccgctgcgagatctgccaacgcaagttcacccagctctcccaccttcagcagcacatacggacccacaccggtgacaagccctacaggtgcacccagatcggatgcaccaaggctttctcccaactctccaatctccagagccacagccgctgccaccagaccgacaaacccttcaagtgcaattcctgctacaaatgcttcacgcacgagaaggatctgttggaacacattcctaaacacaaagagtctaagcatttgaagactcacatctgccagtattgcggcaagagctatacccaagaaacctatctcagtaagcacatgaataagcacgctgaacgagctgataagcgacctccgaTTTCCGCTTTAGGGTTAAGTGGGTTGAACAGGTCTCTGGCTGCTGCGGCGCCGACGGCGACTCCGTTCGGTGATCATCCGTACTGGCCTAAAGTTAGCCCGGATTCCGCGGCGCATATGTCCGATGATGGCGGGTACCATCAGCAGCGAGAGGAGGAGCATCACGAGCAGCAACTGCAGCAGCATCGAGCGCTGTTCGCTCAGCATGAAGCGCAAGAAGAACGGTCGCTGCAGCCGCCTGTTTCTTCAGCGGCGAATTCAGCGTTTACGCCGATCAACTCTATGGCGCCGCATTTGAATGGATTATCGCATCATAGCGCGCTGCCAGCTCGGCCGTACCTCTACGACCCGTTGCACTTCCAACAGGGCAAGCAGCAGCCGAATAGCTTCCCGAATCAGCTGATCTCCCTGCACCAGATCAGGAACTACGCTCACCAGCCCTCGGCAGCCCTCCTGCCCGCTGAGCACATCCTCCCCCATGCCCTCTCCCACAAAGACAAACAGTAA
Protein Sequence: MVSSSGDKRGRKKTISDTEFGVPRGAGDPAEWGLLEASDHEVFGSKADLQLHTQIHLREAKPYRCTQCPKAFANSSYLAQHSRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYRCTQIGCTKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFTHEKDLLEHIPKHKESKHLKTHICQYCGKSYTQETYLSKHMNKHAERADKRPPISALGLSGLNRSLAAAAPTATPFGDHPYWPKVSPDSAAHMSDDGGYHQQREEEHHEQQLQQHRALFAQHEAQEERSLQPPVSSAANSAFTPINSMAPHLNGLSHHSALPARPYLYDPLHFQQGKQQPNSFPNQLISLHQIRNYAHQPSAALLPAEHILPHALSHKDKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412918;
90% Identity: iTF_01028676;
80% Identity: -