Acap033329.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392523.1:1430027-1465999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.02 16.3 2.1 1 23 709 731 709 731 0.98 2 11 8.9 8.1e+02 1.8 0.1 1 23 738 761 738 761 0.90 3 11 0.0078 0.71 11.4 1.5 1 23 792 815 792 815 0.96 4 11 0.0072 0.66 11.5 1.0 1 23 819 842 819 842 0.95 5 11 0.0073 0.66 11.5 0.0 3 21 855 873 854 877 0.91 6 11 0.0011 0.096 14.2 0.1 3 23 886 906 885 906 0.96 7 11 0.0034 0.31 12.6 2.5 2 23 913 935 912 935 0.96 8 11 5.8e-05 0.0053 18.1 0.8 2 23 950 971 949 971 0.97 9 11 4.3e-05 0.0039 18.5 4.9 1 23 977 999 977 999 0.99 10 11 7.7e-05 0.0071 17.7 2.3 1 23 1005 1027 1005 1027 0.94 11 11 2.7e-06 0.00025 22.3 1.5 1 23 1033 1056 1033 1056 0.96
Sequence Information
- Coding Sequence
- ATGGCTGAGGCACAGTCAAACAATGGCGTTACTAGTACAATGACATTGACATCTATAGAAAAACTGCAAGGATTGGACAATTATCTATCGTGGAAGTTTGCCATGAGGATGGTTTTGACGTTGGAAGGTCTGTGGGCTTGCGTAGAAGGCACCGAAGACGACGCGAATAAAAACGCAAGGGCGCTCGCTCGTATTTGCCTGTCGCTTCAGTCCAGCCTGTTTCAGCTTGTGCGCGATTGCACTGGTGCGAAGGACGCGTGGGCGAAGCTCGCTGACACTTTCGAGAACAAAGGACTGTACAGGAAGGTATTGTTACTACGGCAATTACACCGCGTCGAGTATAACCACTATGCCAGTATGTCCGATTACATCGATGGTGTGATGAAGCTTGATGCCCAGCTATCCGATATAGGCAAGTCGATTGAAAATGGTGAGATTGCGGAAATTTTGCTCTCTGGATTGCCGGAGGAGTATAATACTCTAGTTTCTGGCCTTGAGACTGCCGGCTTAACTAATAGTTTAACGCTTGAAGTTGTGCGCACAAGATTATTACAGGAAGATCATCGACGAAACAATGTTCAATCGACGGATACTTTGGCTTGCATTGCAAACAAGAAGAGGAACTTCAAAATTACCTGCTCATATTGCAAGCGTGCTGGACATGTTGCACGGAGATGCTTTAAGAAGAAGCGTGAAGAAGGAACTACGAAACATCAAGATCACACTTTGTATGCTTCGGCCTACTCCGCATGCATCTCTGGAGAGTTCATCATCGACAGTGGCGCTACCAGCCACATGTGTATGAACCAGCAGTTGTTTACAGACTCAAAAAGACACAAAAGTAATGAAGACGATGTGCCAGGCAGCTGTGTCTCGTGCCTTACCGGGAAGATGTCTGTTGCATCGTTTCCTGGGGTTGGCAGCGGACGTGCTGCTCGTCCACTTGACCTGGTCCACAGCGATGTTTGTGGCCCGATGCAAGTGTGCAGCTGGAATGGAGCCCGCTACTTGCTGACTTTTACTGATTGCTATGCGGAAATGACGCCGTCTGCGTGGTCGCCGCTGTCTGGCTCCTATCACTCGCCTGATGAGATGGGTGGTGATGAGGACGACGTGAATCTGCACTCAGGCACCCTGTCCTCTCTGCCGTGCCCTTCATCTGATGAGATGGGTGGTGATGAGGATGACGTGAATCTGCACTCAGGCACCGTGTCCTCTCTGCCGTGCCCTTCATCTCGAGGAGGAGAGTCGATTACGCCGGTCGATGCCGACGCGTCGACGTCTCGCCCCATTAGGAGTACAAGAGCAGCGCCGCGCGGCGTCACCCGCCCGTCCCACGGGAACACCACACATTCTCGGGACAAAAAGCAGCCCATGTGTCAATCCAGGGTGCCGCCCCGCACCATAATCCATAAAAACTGGTCCAGCCGTCTGAGCGCGAGGAAGCAACTAACACACACAAACACACTCACAAACCCTCGCCACAAAACAAAAAGAACCAAAAATCCAGAACCTCAGAACCTCGCACCGGACGGTGCGGCGGAACACCGCACCGTCCGGGACACCACATCGTCCGGGACACCGCACCGCACCGTCCGGGACACCACACCGTCCGGGACACCACACCGTCCGGGACACCACACCGTCCGGGACACCACAAGAAACAAGAGGAACCACCAGACTGACGATGCACTGACGACTGCCTACTTAAGAACCATAGACCGAAACCTTCACTCACTCAACTTTCCACTCACTGCGACAACCCTCACAGAAACCATAGACATCTCTTATGAAATAAAGGAAGAGACCACAGACCTAGACCTGGAAAGCGTAGACAATATAGACAACATATCAATGAAATATGAATCAGATGAAGAGCCTCTATCCAAAAAAGTAAAGAAAAAGAGAAAAAAGAAAGTAATCAAAATTGAAAATGACATTAAATTAGAAAATGAAAATAATTTAGGCGAGGATAACATTGATAATGAAAATGATAGGGTTGTTATAGACGAGATAAATGAATTGGAAGGTTTAAATGATATACAGGTTGTAGTTTTAAGTAAGGAGCAGCAAATTGAGGAGGTTTTAATGAGGAAGAACTCTTTCAATTATTTGAACTCTTTTTATAAATGTGATAAGTGTTTTAAAGGATTTATCACTGACTCAACATATAAAAATCACATGGCCAGACATGCACCGGTGAGCGGCGCGCACGTGTGCGAGGTGTGCCTGACGCGCTGGGGCACGGCGCGGGCGCTGCGCGCGCACGTAGTGACGTCACACGAGCGCCAGTACGTCTGCCGCAAGTGCAACCACGTCTCCAAGTCCAGTCACAGAGCGAAGGAGCACAGCAAATGGCATCTCGGGTTCACGTACACTTGTAAAATCTGCGGGGCCACGTTCGCCAAGTCTACGAGTCATCTAACGCATATAAGGTTGCAGCATCCTTCCAATCACTGCTGCGATGTGTGCGGAGAGTCCTTTATCGGAGAGTACGGGCTGGCCATGCACAAGAAGAAAGCGCATAGAAACCTGAACAACAAAGTGAAATCGGAGTCCCTGTGCGTGTTATGCGGCGTGCAGTTCCGCACCCTGGACGCGCTCAACAGGCACATCAGTGCCGCGGAACACAACTCCTGCGATAGCCTCAGGCCGTGTCTTAGCTGTGGCGAAGGTTTCTCAACGGAAGAAACACTGAAAGAACATCTGAAAATACATATTAAAGATGACAGCGTTCGGTGCGAAGAGTGCAACAGAACGTTCGCGCACGAGAAGAGCTACGCGATCCACCATCAGCGCGTGCATCTCGGCGTGCGGGCGCGTGCGCGCCGCGAGCGGGAGCGCGTGGTGTGCGAGGTGTGCGGCAAGCGCTGCATCTCGAAGGCGACGCTGGTGTACCACCAGCGCACGCACACCGGCGAGAAGCCCTACCAGTGCCGCCACTGCCCCAAGCGGTTCAGCGTGTGCCAGCTGCTGCAGATCCACATCCGCACGCACACAGGCGAGCGGCCGTTCAAGTGCACGCGCTGCCCGAAGGCGTTCAAACACAAGGCGGCGCTCAACCGACACGACCGGGTGCACACGGGCGCGAAGCCCTACGCGTGCCCGCACTGCGGCAAGTCGTTCTCGCAGTCCAACTCCATGAAGACCCACGTCACCACTGTCCACCTCAAGCTGCCGGCGCCCTACCGCCAGCGGCGGAACAAGCCCGAATAA
- Protein Sequence
- MAEAQSNNGVTSTMTLTSIEKLQGLDNYLSWKFAMRMVLTLEGLWACVEGTEDDANKNARALARICLSLQSSLFQLVRDCTGAKDAWAKLADTFENKGLYRKVLLLRQLHRVEYNHYASMSDYIDGVMKLDAQLSDIGKSIENGEIAEILLSGLPEEYNTLVSGLETAGLTNSLTLEVVRTRLLQEDHRRNNVQSTDTLACIANKKRNFKITCSYCKRAGHVARRCFKKKREEGTTKHQDHTLYASAYSACISGEFIIDSGATSHMCMNQQLFTDSKRHKSNEDDVPGSCVSCLTGKMSVASFPGVGSGRAARPLDLVHSDVCGPMQVCSWNGARYLLTFTDCYAEMTPSAWSPLSGSYHSPDEMGGDEDDVNLHSGTLSSLPCPSSDEMGGDEDDVNLHSGTVSSLPCPSSRGGESITPVDADASTSRPIRSTRAAPRGVTRPSHGNTTHSRDKKQPMCQSRVPPRTIIHKNWSSRLSARKQLTHTNTLTNPRHKTKRTKNPEPQNLAPDGAAEHRTVRDTTSSGTPHRTVRDTTPSGTPHRPGHHTVRDTTRNKRNHQTDDALTTAYLRTIDRNLHSLNFPLTATTLTETIDISYEIKEETTDLDLESVDNIDNISMKYESDEEPLSKKVKKKRKKKVIKIENDIKLENENNLGEDNIDNENDRVVIDEINELEGLNDIQVVVLSKEQQIEEVLMRKNSFNYLNSFYKCDKCFKGFITDSTYKNHMARHAPVSGAHVCEVCLTRWGTARALRAHVVTSHERQYVCRKCNHVSKSSHRAKEHSKWHLGFTYTCKICGATFAKSTSHLTHIRLQHPSNHCCDVCGESFIGEYGLAMHKKKAHRNLNNKVKSESLCVLCGVQFRTLDALNRHISAAEHNSCDSLRPCLSCGEGFSTEETLKEHLKIHIKDDSVRCEECNRTFAHEKSYAIHHQRVHLGVRARARRERERVVCEVCGKRCISKATLVYHQRTHTGEKPYQCRHCPKRFSVCQLLQIHIRTHTGERPFKCTRCPKAFKHKAALNRHDRVHTGAKPYACPHCGKSFSQSNSMKTHVTTVHLKLPAPYRQRRNKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -