Basic Information

Insect: Apotomis capreana
Gene Symbol: -
Assembly: GCA_947623375.1
Location: OX392498.1:58461940-58486822[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0032 0.29 12.7 5.7 1 23 317 339 317 339 0.99

2 11 1.9e-05 0.0017 19.7 0.5 1 23 345 367 345 367 0.99

3 11 0.00027 0.025 16.0 1.7 1 23 373 396 373 396 0.96

4 11 0.049 4.5 8.9 3.2 1 21 402 422 402 424 0.95

5 11 5e-05 0.0045 18.3 0.8 1 23 430 452 430 452 0.99

6 11 0.00011 0.01 17.2 3.3 1 23 458 480 458 480 0.98

7 11 0.00094 0.086 14.3 1.1 1 23 488 511 488 511 0.98

8 11 0.014 1.3 10.6 5.0 2 23 518 539 517 539 0.96

9 11 0.0014 0.13 13.7 2.1 1 23 545 567 545 567 0.98

10 11 2.3e-06 0.00021 22.6 1.9 1 23 573 596 573 596 0.96

11 11 1.5e-05 0.0014 19.9 3.8 1 23 610 632 610 632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0032	0.29	12.7	5.7	1	23	317	339	317	339	0.99
2	11	1.9e-05	0.0017	19.7	0.5	1	23	345	367	345	367	0.99
3	11	0.00027	0.025	16.0	1.7	1	23	373	396	373	396	0.96
4	11	0.049	4.5	8.9	3.2	1	21	402	422	402	424	0.95
5	11	5e-05	0.0045	18.3	0.8	1	23	430	452	430	452	0.99
6	11	0.00011	0.01	17.2	3.3	1	23	458	480	458	480	0.98
7	11	0.00094	0.086	14.3	1.1	1	23	488	511	488	511	0.98
8	11	0.014	1.3	10.6	5.0	2	23	518	539	517	539	0.96
9	11	0.0014	0.13	13.7	2.1	1	23	545	567	545	567	0.98
10	11	2.3e-06	0.00021	22.6	1.9	1	23	573	596	573	596	0.96
11	11	1.5e-05	0.0014	19.9	3.8	1	23	610	632	610	632	0.95

Sequence Information

Coding Sequence: ATGCCGCCTCCTGATAAGAAGGCCGTATCAGATGGGAAACTGTTACAATCCTATCTGAACACCTACAGCACTTCGACTGACCCTCCTGCTGTCCTGGACTTGAACCGTGATGAGGAAGCGACCAGCAATGGAGTCACATACTTCGTGGACCAGGACGGCCGCTACTACTATCAACCGGGAGAAAATGAATCCATAATGTCACTGCCCACACCTGATAATGACGATGCTGCCCAGGAGGGTCTGCCCGAGGAAGACGCCGCCGCCATGATGGAGGAGGGCTACCAGACCGTGACCCTGGTGCCCTCGGAGACGGGCTCCGGGGAGGTCAGCTATGTCCTCGTGGTTCAAGAGGAGACCAAGCCGGTGCTCAACGTGGACATCAAAGTTGACCAGACGGGCTCCGGGGAAGTCAGCTATGTCCTCGTGGTGCAAGAGGAGACCAAGCCAGTGCTCAACGTGGACATCAAAGTTGACCAGACGGGCTCCGGGGAAGTCAGCTATGTCCTCGTGGTGCAAGAGGAGACCAAGCCAGTGCTCAACGTGGACATCAAAGTTGACCAGACGGGCTTCGGGGAGGTCAGCTATGTCCTCGTGGTGCAAGAGGAGACCAAGCCAGTGCTCAACGTGGACATCAAAGTTGACCAGACGGGCTCCGGGGAAGTCAGCTATGTCCTCGTGGTGCAAGAGGAGACCAAGCCGGTGCTCAACGTGGACATCAAAGTTGACCAGACGGGCTCCGGGGAAGTCAGCTATGTCCTCGTGGTGCAAGAGGAGACCAAGCCAGTGCTCAACGTGGACATCAAAGTTGACCAGGAGGAGGAAGAGGAGGACAAAGGCAATGAGGATGTATACACGTTCGAGGAGGAGGGTGTCGAGGAGGCCTCCGAGGAGGAAGAGGAGGTGGGCAAGCGCAAGAAGACGCCGAAGCGCCGGAACCAGCGCTCCAAGTTCACGTGCTCTTTCTGCAACTACATGAGCCATAGGCGTTACCTCCTCCTGCGGCACATGAAGACCCACTCCGAGGACCGACCCTACAAATGCAAGGTGTGCGAGCGCGGGTTCAAGACGGTGGCGTCGCTGCAGAACCACGTGAACATGCACAACGGCATCAAGCCGCACGTTTGCAAGTACTGCAGCAGTCCCTTCACGACGTCAGGGGAACTGGTTCGGCACGTCCGCTACAAGCACACACACGAGAAGCCCCACAAATGCTCTGAATGCGACTACGCCTCCGTGGAGCTATCGAAGCTGCGGCGCCATGTACGCTGTCATACCGGCGAGCGGCCATACCAGTGTCCAGACTGCACATACGCCTCGCCAGACACATTCAAGTTGAAGCGGCACCTGCGCACACACACGGGCGAGAAGCCATACAAGTGCGACAGCTGCAACATGTGTTTCACGCAGTCGAACTCGCTCAAGGCGCACAAGCTCATACACAATGTGTCAGAAAAGCCCGTGTACCGATGCGAACTCTGCCCAGCCAAGTGCGGGCGCAAGACCGACCTGCGCATTCACATACAGAAGCTACACACCGCGGACAAGCCTCTCAAGTGCAAGAGGTGCGGGAAATCGTTCCCCGACCGCTACTCCTGCAAGATGCATAGTAAGACTCACGAGGGCGAAAAGTGCTTCAAATGCGACCTCTGCCCGTACGCGTCGACGATGCTGCGCCATCTCAAGTCGCACATGCTCAAGCATACCGACGAGAAACCTTTCGTGTGCACCGAGTGTGACCAAAGCTTCCGTCAAAAACAATTATTGCGACGGCACCAGAACTTGTACCACAATCCTGACTACGTGCCCAAGCCGCCGAAGGAGAAGACCCACGCTTGCCACGAGTGCAAGCGAACTTTCGCGCACAAGGGCAACCTCATCAGGCATTTGGCGATCCACGACCCGGACTCTGGCCACACGGAACGAGCGCTGGCCCTCAAGATCGGTCGGCAGCGCAAGATCAAGTACATGACCCAACGCCAGCAGGAGGAGCAAAACGAGTCCGACGACAACACGATGGTGAAGCTCGGGCTCACGAGCAACGAGCTCCGCCGCGGCGAGCTGGTCACCGTCGCGGACGGCGACGGGCAGCAGTACGTCGTGCTCGAAGTGATACAGCTGGAGGACGGCACCGAGCAGCACGTGGCCGTCGTGGCGCCCGAGTTCATCGAGTGCGAGGAGCCAGATGAAGAAGAAGAAGACGATGAACAGGACCAAGAACCAATGGACACTCAGGAAGTGCGTCACAAGGATCCCATCATCGAGAAGAGCATCAAACTGGAGAAGGATGTCAACACCTGCTTCGGTTTTGACGAAGATGACGAGGGCGAGGGCGAAGAAGATTACGAAATGCTCGAGGCTCAAGGCTAG
Protein Sequence: MPPPDKKAVSDGKLLQSYLNTYSTSTDPPAVLDLNRDEEATSNGVTYFVDQDGRYYYQPGENESIMSLPTPDNDDAAQEGLPEEDAAAMMEEGYQTVTLVPSETGSGEVSYVLVVQEETKPVLNVDIKVDQTGSGEVSYVLVVQEETKPVLNVDIKVDQTGSGEVSYVLVVQEETKPVLNVDIKVDQTGFGEVSYVLVVQEETKPVLNVDIKVDQTGSGEVSYVLVVQEETKPVLNVDIKVDQTGSGEVSYVLVVQEETKPVLNVDIKVDQEEEEEDKGNEDVYTFEEEGVEEASEEEEEVGKRKKTPKRRNQRSKFTCSFCNYMSHRRYLLLRHMKTHSEDRPYKCKVCERGFKTVASLQNHVNMHNGIKPHVCKYCSSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPDCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVSEKPVYRCELCPAKCGRKTDLRIHIQKLHTADKPLKCKRCGKSFPDRYSCKMHSKTHEGEKCFKCDLCPYASTMLRHLKSHMLKHTDEKPFVCTECDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHACHECKRTFAHKGNLIRHLAIHDPDSGHTERALALKIGRQRKIKYMTQRQQEEQNESDDNTMVKLGLTSNELRRGELVTVADGDGQQYVVLEVIQLEDGTEQHVAVVAPEFIECEEPDEEEEDDEQDQEPMDTQEVRHKDPIIEKSIKLEKDVNTCFGFDEDDEGEGEEDYEMLEAQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654560;
90% Identity: -
80% Identity: -