Acap033378.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392523.1:1958084-1971550[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0027 0.25 12.9 0.1 3 23 82 102 80 102 0.97 2 22 0.081 7.4 8.2 0.5 1 20 109 128 109 131 0.82 3 22 0.0013 0.12 13.9 4.2 1 23 161 184 161 184 0.97 4 22 0.002 0.18 13.3 0.3 3 23 191 212 190 212 0.95 5 22 0.036 3.3 9.4 0.1 1 21 223 243 223 244 0.92 6 22 3.2 2.9e+02 3.2 0.0 3 20 256 273 255 275 0.89 7 22 0.0019 0.17 13.4 0.6 3 23 284 305 283 305 0.97 8 22 0.00088 0.08 14.4 0.2 1 23 324 346 324 346 0.98 9 22 0.068 6.3 8.5 0.5 1 21 352 374 352 375 0.92 10 22 0.068 6.3 8.5 0.5 1 21 393 415 393 416 0.92 11 22 0.068 6.3 8.5 0.5 1 21 434 456 434 457 0.92 12 22 0.068 6.3 8.5 0.5 1 21 475 497 475 498 0.92 13 22 0.068 6.3 8.5 0.5 1 21 516 538 516 539 0.92 14 22 0.068 6.3 8.5 0.5 1 21 557 579 557 580 0.92 15 22 0.068 6.3 8.5 0.5 1 21 598 620 598 621 0.92 16 22 0.068 6.3 8.5 0.5 1 21 639 661 639 662 0.92 17 22 0.068 6.3 8.5 0.5 1 21 680 702 680 703 0.92 18 22 0.068 6.3 8.5 0.5 1 21 721 743 721 744 0.92 19 22 0.068 6.3 8.5 0.5 1 21 762 784 762 785 0.92 20 22 0.068 6.3 8.5 0.5 1 21 803 825 803 826 0.92 21 22 0.02 1.8 10.2 1.8 1 23 844 869 844 869 0.94 22 22 0.019 1.7 10.2 0.1 3 23 878 899 877 899 0.97
Sequence Information
- Coding Sequence
- ATGCAAGAGTGTGGTGGGCTGGGCAGCGTGTGCAGCGTGTGCCGAGCGCAGCTCGTCCACGCTAGTTCGCTACGCATGCGTGGACGCCGTGCTCAGGCGCTGCTGGCGGCTGCGCTGACACAGTCGCATTACGAGTTCCAGAACAAGTATAATGTAAAGATAGATATACTGTCGAAAGAAGAGCAGTTGCGAGAGATTGAGACGAGGAAGATGGCGCCGAGCTACACGTTGGCGGCGTACGGGTGTGAAGAGTGCGGGAAGGGATTTGCTACGAAACAGGTATACGACGCGCACTTAATGAAACATGACGTGTCAGCTGGTGCGCACGCATGCAGCATATGCGGCATACGTTTCCGCACGTTGAGCCGCGCGCACGTACACGCCGACGCGCACCGCCTGCGGTTTACGTGCGCGTGCGGCTTTTTGACGCGCACCAGATTCATAGCCAAGAACCATTTCCTGTCGCACGCGGGCACGACACATCAGTGTCCACATTGCGACGCAGTATTTAGCAAGTACACATCGTATCTAACGCACGTGCGGCGCCGGCACCCCGCCATGAATGTCGCATGCGACGAATGTGGAGAGACCTTTGTAGGGCCCAACGGGCTGCGGCACCACAAGACGAGAGTGCACAGAAACAGAGTGCTGCCGAATCCATCGCAGCACGCATGCGCGACGTGCAACTTGCATTTCGCGAGCGAGGACTCACTCGCCGCGCATGCGCGGTCCGCACCCACGGAGCACGATGCGAGCTTAAATCCATGTACGGTGTGTGGTGAGAGCCAGGGCAGCCCTGCGGCGCTCGCGAGACACGAGGACACGTGTGCCGCGCCTCGCACGCGTCTGTGCCGGGAGTGCAACAAGACCTTCGTGGACGAGTCATCGTACGACACGCACTACCAGCGAATCCACCTCAACATCCGCATGAAGGAGCCGCCGCGCGCCCGGCCCCGCCTCGCACGTCCGTTCATCTGCGAGCTGTGCGGGACAGAATGCGGCTCAGTATCCAGCCTGGCGGCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTCAGTATGTTACAGTGTCCGCACCAGCGCAGTCACGCCGGAGCCCGGCCGCACGCGTGTCCGCAGCCCGGCTGTCCGCTGCGCTTCGGGAGCGTGCACAACATGCGGCGTCACCACCGTGTGGTACATCTGGGTCAGCGGCCGCAAGTGGCATGCGGCGTGTGCGGCAAGCTCCTAGCGCATGCGGCATCGCTCAAGCTTCACGTGAACACTGTTCACTTGAAGTTGCCCGCGCCGCCGCGTCGACGGCGGCAAGAAGACGATAAATAA
- Protein Sequence
- MQECGGLGSVCSVCRAQLVHASSLRMRGRRAQALLAAALTQSHYEFQNKYNVKIDILSKEEQLREIETRKMAPSYTLAAYGCEECGKGFATKQVYDAHLMKHDVSAGAHACSICGIRFRTLSRAHVHADAHRLRFTCACGFLTRTRFIAKNHFLSHAGTTHQCPHCDAVFSKYTSYLTHVRRRHPAMNVACDECGETFVGPNGLRHHKTRVHRNRVLPNPSQHACATCNLHFASEDSLAAHARSAPTEHDASLNPCTVCGESQGSPAALARHEDTCAAPRTRLCRECNKTFVDESSYDTHYQRIHLNIRMKEPPRARPRLARPFICELCGTECGSVSSLAAHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVSMLQCPHQRSHAGARPHACPQPGCPLRFGSVHNMRRHHRVVHLGQRPQVACGVCGKLLAHAASLKLHVNTVHLKLPAPPRRRRQEDDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -