Acap022557.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392521.1:5439100-5447289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.034 3.1 9.4 2.8 1 22 24 45 24 45 0.96 2 19 0.035 3.2 9.4 5.6 1 23 78 101 78 101 0.95 3 19 0.53 48 5.7 1.4 2 23 128 149 127 149 0.96 4 19 0.12 11 7.7 1.0 2 23 172 194 171 194 0.93 5 19 0.005 0.46 12.0 0.5 1 23 200 223 200 223 0.95 6 19 0.00029 0.027 15.9 1.1 1 23 229 252 229 252 0.96 7 19 0.22 21 6.8 0.2 2 23 258 280 257 280 0.90 8 19 0.00031 0.028 15.9 0.5 1 23 287 310 287 310 0.96 9 19 0.00014 0.012 17.0 0.9 1 23 316 338 316 338 0.95 10 19 1.4e-05 0.0012 20.1 2.2 1 23 344 366 344 366 0.98 11 19 3.1e-08 2.8e-06 28.4 1.4 1 23 372 394 372 395 0.96 12 19 0.01 0.92 11.1 7.0 1 23 539 561 539 561 0.98 13 19 0.006 0.55 11.8 0.7 2 23 631 653 630 653 0.96 14 19 0.00047 0.043 15.3 0.8 2 23 660 682 660 682 0.96 15 19 0.34 31 6.3 1.8 1 23 687 710 687 710 0.83 16 19 0.018 1.6 10.3 3.8 1 23 715 738 715 738 0.97 17 19 0.00014 0.013 16.9 4.3 1 23 743 766 743 766 0.97 18 19 1.1e-05 0.0011 20.3 0.5 1 23 772 794 772 794 0.98 19 19 0.031 2.8 9.6 0.2 1 23 802 824 802 824 0.98
Sequence Information
- Coding Sequence
- ATGAGGAAACTCCTGTTCCAGCTGTTAAGACACTCGACCGTCGTGCCTTTCAGGAGATGCGGCAACATCTACAAATGTTTCTTCTGCTATGAGAACTTCCATAAAGCCAGTGATCTAAAAGAGCACACCAGAAGTGACGAAGACGCCCAAAAGCGGGACGAACTCGTCAAACTGCTCACCATTATCATAGAGAACTCGACCGTGATACCATTCAAGTGGCACGCCAACGGCTACATGTGTTTCTACTGCGGCTGCCCCTTCGACGACTGCTTTAAACTCAAGCAGCACACCAAGGAAGAACACGAGGGCGCGAGACTCGAGACTGTCTTAAGATCAACCGTCTCAAAAAGCAGGAGCATCAAACTCGATGTCACTGAAGTAACTTGCAAGAAATGCAGCGAACCTATCTACAGTCTCCAAGAATTCTTCCATCACATACAGCAGCACGGTTTCAGCATCGATAAAGAAGCTACGAATTTCTGTTACCCGTTCAAACTGACAGGGAACGATATGTCGTGTCTCGAATGCGGAATGTCTTTCAGGTTCTTCGGCCCCCTTCTCATACACACGCACAAATATCACAGCAAGACCAAACCGTTCTTATGCGAGATTTGCGGGCAGGGATTCATAGCGAAAGCGAACGTGGAAAGCCATCGGAAGATGTGTCATCCAGCCAATTGTACCTTCGATTGCAAAGAATGCAGCGAGACGTTCCCAACGCAATACAAAATGACGTATCACATGGAGAAAGTGCATACGCCGGCTAAATTGAAATGTCCGAAATGTCCAGAGATTTTGGGCAGTAAATATTTGAAGAAACGGCATTTAGCGTTCGTTCATGACGTGAAGAATGCTCAGTTCCAATGCGATATATGTCAGAAGGTATTTGCTTTACAGAACAAGCTTGTGCAGCATAAATTACGCGTACATCAGAAGGAGAAAAACTTCACTTGCGAGATTTGTGGGTTCAAAGTTTTCAGCAAAGAACTTTTGAAGCGTCACATGGTGAAGCATGACGACTCCCGTCCGTTTGAGTGTGATCTGTGCAAGAAAACGTTTCAAAGGAAGAAGACTCTAGAGATACATAGGAGGATTCATACGAATGACAAAAGGTATGAGTGTAAGGAGTGTGGGAGATCGTTCGTGCAGTGGACAAGCCTCAAACTGCATATGAGGGTGCACCATTCCACCGCGTATCGACTGCGCGCGGCTGCCGCGCGAGCTATGTTCGACCGCGGCAAACCTGCGTTTTGGTGCGCGAGCCAATTTTTCAATATAGCGCGGCAGGCGATCCGTGAACAAACAATCATAAAGGTCCGTCCCAATTGCGCGCGCACAATCCTTTGCCGCGCCACCAAAAACCGACACGAACTGGTTCGCCGCGCGGCACGTTCGAGCGCGCCAATGTTCGAGCTGCCGCGCGCGGCGGAGCCGTCCCCATATTGCGCGGCCGCCGCGCGAGCTAATGTTCGATGGTTTGCCGCGCGCAACCCAAAGAAACACGACATCAGAGTGCCAACGCAACAGGACTGGCAGAAGGATGCCGCCCGTCGCTACGTCCACGCCGTCTTCTCCAACTCCTCGATGATGCCCTTCCGTTGGCGCGGCAACCGCTACATATGCTTCTACTGCCACTTCACCTTCCACGAGGCTTCCAGTCTCCGAACCCACTTCAGAACTCATCAAAACGTGGGCATAATGAAGCATCTGACCCAAAATAGAGACTTCGCACCTATAAAAGTAGACGTTGGAGAGACATTGAAATGCCTCAAATGCAACCATGAAGAGCTCACTCTAGAGGGATTAATCGCGCATCTAAAAAGTCATAAATTGATCGGGGATATAGATCAAGAATGCTTCTTACCTTTCCGGCTAGCTGATCATCAGATATCGTGCATGAAGTGCGGAAAATCGTATCAGTTCTTCGGGATGTTATACTCTCATATGAATAAAGTTCATTTGGAAGGAACGGAGCGGGTTTGCGAGACGTGTGGTCAGAGCTTCTTCTCTGATTTCAGCCTCCGAAAACATATACAAAGCTATCATTCAACCGCAGACTTTAAATGCGGACATTGCAGTGAAAGCTTCAAACTAGACGCGAATAGAATCAGCCATGAATTCAAGGAGCATAATATAAAGACTTTCAAATGCTACAAATGCGATGAGATGTTTGGCTCGCAATATCTAAGACGCTTGCATATGCACAGCACGCATTTGAAAGCTGAATTCACCTGCAAGGACTGTTCGAAAACTTTCCTGCATAAATCTTTGCTGACGCGCCACGTAAAAAGAGTGCATTTGAAAGAGAAGAACTTCTCCTGCCCGCTTTGTGGGGAGATGTTCTATGATCTCCAGACTTTGAACACTCATATTAAGAAGCATTCTGCGGCTCCTCAGAAGAGTTTTCAGTGTAAGGTTTGTATGACGAGTGTGGGGAGTAAGGAGGAATTAGATGAACATATGATGAGTCACGCGGGACAGTCTTTATCGTTGAAATAG
- Protein Sequence
- MRKLLFQLLRHSTVVPFRRCGNIYKCFFCYENFHKASDLKEHTRSDEDAQKRDELVKLLTIIIENSTVIPFKWHANGYMCFYCGCPFDDCFKLKQHTKEEHEGARLETVLRSTVSKSRSIKLDVTEVTCKKCSEPIYSLQEFFHHIQQHGFSIDKEATNFCYPFKLTGNDMSCLECGMSFRFFGPLLIHTHKYHSKTKPFLCEICGQGFIAKANVESHRKMCHPANCTFDCKECSETFPTQYKMTYHMEKVHTPAKLKCPKCPEILGSKYLKKRHLAFVHDVKNAQFQCDICQKVFALQNKLVQHKLRVHQKEKNFTCEICGFKVFSKELLKRHMVKHDDSRPFECDLCKKTFQRKKTLEIHRRIHTNDKRYECKECGRSFVQWTSLKLHMRVHHSTAYRLRAAAARAMFDRGKPAFWCASQFFNIARQAIREQTIIKVRPNCARTILCRATKNRHELVRRAARSSAPMFELPRAAEPSPYCAAAARANVRWFAARNPKKHDIRVPTQQDWQKDAARRYVHAVFSNSSMMPFRWRGNRYICFYCHFTFHEASSLRTHFRTHQNVGIMKHLTQNRDFAPIKVDVGETLKCLKCNHEELTLEGLIAHLKSHKLIGDIDQECFLPFRLADHQISCMKCGKSYQFFGMLYSHMNKVHLEGTERVCETCGQSFFSDFSLRKHIQSYHSTADFKCGHCSESFKLDANRISHEFKEHNIKTFKCYKCDEMFGSQYLRRLHMHSTHLKAEFTCKDCSKTFLHKSLLTRHVKRVHLKEKNFSCPLCGEMFYDLQTLNTHIKKHSAAPQKSFQCKVCMTSVGSKEELDEHMMSHAGQSLSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -