Acap017509.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392512.1:12056199-12074951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00069 0.063 14.7 0.2 2 23 140 161 139 161 0.93 2 17 0.001 0.092 14.2 2.4 1 23 167 189 167 189 0.96 3 17 0.001 0.092 14.2 2.4 1 23 218 240 218 240 0.96 4 17 0.001 0.092 14.2 2.4 1 23 269 291 269 291 0.96 5 17 0.001 0.092 14.2 2.4 1 23 321 343 321 343 0.96 6 17 0.001 0.092 14.2 2.4 1 23 372 394 372 394 0.96 7 17 0.001 0.092 14.2 2.4 1 23 424 446 424 446 0.96 8 17 0.001 0.092 14.2 2.4 1 23 475 497 475 497 0.96 9 17 0.00022 0.02 16.3 0.5 1 23 592 614 592 614 0.98 10 17 7.2 6.6e+02 2.1 0.1 2 23 621 643 620 643 0.91 11 17 0.00039 0.035 15.5 0.1 3 23 692 713 690 713 0.92 12 17 0.0059 0.54 11.8 0.2 1 23 728 750 728 750 0.96 13 17 1.6e-05 0.0015 19.9 0.2 1 23 777 799 777 799 0.98 14 17 0.0011 0.099 14.1 0.2 1 23 805 827 805 827 0.97 15 17 0.00061 0.056 14.9 0.3 1 23 833 855 833 856 0.95 16 17 0.017 1.6 10.4 1.3 1 23 869 891 869 891 0.95 17 17 0.032 2.9 9.5 0.0 1 20 1022 1041 1022 1044 0.93
Sequence Information
- Coding Sequence
- ATGGATGGAGATGGTGAGGATTTCAACCTCCACTGGGAGGAGGAGGATGAATCAAAGCACATCCCAGGTGTAGTGGGTTCCGAGGTGATCTGTGGCCTAGAGAATGTGCAAGCTGGATCTTACTCAAATATGAAGTCAGAAGTCTTTATACCGGACACAGATCAGATAGCTGCCGAGAATCTTATGTTCCTGTCTCAGGATGTAGTCAGTTACACAGATGCTGCCGAGCTGGCAGTGGACCCAAATGTGGAGTGTGTCACGGAGGAGGTGATTACGGATGACTGGACGGAGGGACAGGACAGGGTTGAAGTCCCACTGGAGCACTTTGCCAATCCAGTATCAGACATAAAAGAGGAAAATGACGTAGATGTTCCATTACCAACAGATCAGGACCAATACACAGCGATGCGGCCATGGCCGTGCGACTTCTGCTCGCGCCGGTTCCGCAAGAAAGCGGCCCTGATGAACCACATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATAACGCAGACCCGATTGACTACGGTAAGTGTCGCACGTTCTGCATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATAACGCAGACCCGATTGACTACGGTAAGTGTCGCACGTTCTGCATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATGATAACGCAGACCCGATTGACTACGGTAAGTGTCGCACGTTCTGCATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATAACGCAGACCCGATTGACTACGGTAAGTGTCGCACGTTCTGCATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATGATAACGCAGACCCGATTGACTACGGTAAGTGTCGCACGTTCTGCATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATAACGCAGACCCGATTGACTACGGTAAGTGTCGCACGTTCTGCATGGTCGCTCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTCCACGCTATGGTGCCTGATAACGCAGACCCGATTGACTACGAAGATGTACTAGATAACAGCCAAGTAATAAAGCCAAAGAAAAAAAGAGGGAGACGAAAAAAGAATCCCGAACCGGTGGAAAACGGCGTATGGGAGAACATGACATCAGCGCGCACCCAGCAATGGTCGCGGCGCGCTCGCTCGCCGGCCAAGCCGCCGCCGCCGCTGCCGCCGCCCACGCCGCCCTCGCCGATGTCGGAGCCCGAGCCGGAGCCCTTACCGGTGCCAGCTGACCCTAGTCGACCCTTTGTCTGCCGGCATTGCGGCGTGGGCTTCGCTAGGGAGAAGGCTCTGCAGTCCCACTCCAGGGTTCATGGAGGCGATTCACCAGTGGAATGCGGCGTGTGCGGCGAACTGTGCTGGTCGCGGGAGGCCCTAGCGTCACACGCGCGTCTACGACATCCGCACCAGCCGCCGCCGGCCGAGCAGCGGGAGCCCTACGACTCCAACTCCGGTGACGACGATATGGAGTACCAGCTGTCGCCTCTAGCCGACAGTGGCAGCGAGCGAGCCGTATACGACACACAACGTGGACCAGAGTTATTCTGTCAAGATTGTGGAGTCGCCTTCCAACGAGCAGACCTGCTGCGGCGGCATCAAGCCGCCGCTCACAGCCACAAGCGGCATGACAGTTCATCGAGCACTTGGGCGGAGCACTCGTGCGACGTGTGCGGCGAGTCGTGCGCCGACGCGCTGCAGCTGCTGGCGCACGCCGAGCGACACGCCGACCGGCCCGCGCCCACCAGATTCAAGAAGATGTCACGAGGAAGAAATAACACATCCTCCAATAGTTCACGGCAGTTCCCCTGTAGAGAATGCGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACATCCGGATCCACACGGGCGAGCGCCCATATGCTTGTCGCTTCTGCTGGAAGGCGTTCGCGGACGGCGGCACGCTGAGGAAACACGAGCGGATACATACCGGTGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCAGGGCCAACGGTGGCCCGGCATTCTGTTGCGTTGTTTGTGGAAGAACGCTGCACACGAGTGCGGAACTGGTGCAGCACCTCATCCAGCACTGCGACGCCAACACCGCGCTCAAACGGCAGCCGCAGACCGGCCCTCGGAAATACAAGCGGCGACGGAAAATAAAGTCGGAGGTGTCCCCGCGGCACTCGTGGGAGCGCGGCGTGTCCCCCTCCCCCCCTCGCGCTCCCCCCTCTCCCCCCTCGCCCCCCTCCCCTCCCCGCCGCCGCCGCCGCCGCGCCGCGCCCGCGCCCGCGCCCCGCCCCCGCATGATACACACCGACGACATACGCGCCCGGACCAAACAGGTCCGCGGACGCCGCCCCCCCCGGCACCCGGCGGACGACCTGCGCGCCATCCGGCCGCGCTCGGCCACGCCCTCTCCGCCCGCCCCCTCCCCCTCCCCGCCCCCGCCCTCGCCCCCCGCGCACGAGGGCGGCCCCTTCAAGTGCGAGATGTGCGCGGAGGAGTTCCCGCGCCGCGACGCATTGCTGCTGCACGTGCCGGTGCACATATGA
- Protein Sequence
- MDGDGEDFNLHWEEEDESKHIPGVVGSEVICGLENVQAGSYSNMKSEVFIPDTDQIAAENLMFLSQDVVSYTDAAELAVDPNVECVTEEVITDDWTEGQDRVEVPLEHFANPVSDIKEENDVDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPIDYGKCRTFCMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPIDYGKCRTFCMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDDNADPIDYGKCRTFCMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPIDYGKCRTFCMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDDNADPIDYGKCRTFCMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPIDYGKCRTFCMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPIDYEDVLDNSQVIKPKKKRGRRKKNPEPVENGVWENMTSARTQQWSRRARSPAKPPPPLPPPTPPSPMSEPEPEPLPVPADPSRPFVCRHCGVGFAREKALQSHSRVHGGDSPVECGVCGELCWSREALASHARLRHPHQPPPAEQREPYDSNSGDDDMEYQLSPLADSGSERAVYDTQRGPELFCQDCGVAFQRADLLRRHQAAAHSHKRHDSSSSTWAEHSCDVCGESCADALQLLAHAERHADRPAPTRFKKMSRGRNNTSSNSSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAFCCVVCGRTLHTSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKIKSEVSPRHSWERGVSPSPPRAPPSPPSPPSPPRRRRRRAAPAPAPRPRMIHTDDIRARTKQVRGRRPPRHPADDLRAIRPRSATPSPPAPSPSPPPPSPPAHEGGPFKCEMCAEEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -