Acap014271.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392520.1:12433765-12465123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.1 8.3e+02 1.8 0.7 3 17 58 72 56 73 0.89 2 23 0.0083 0.76 11.3 0.1 1 20 441 460 441 462 0.94 3 23 0.0083 0.76 11.3 0.1 1 20 474 493 474 495 0.94 4 23 0.0083 0.76 11.3 0.1 1 20 507 526 507 528 0.94 5 23 0.0083 0.76 11.3 0.1 1 20 540 559 540 561 0.94 6 23 0.0019 0.18 13.3 0.5 1 23 573 595 573 595 0.96 7 23 0.00021 0.019 16.4 3.7 1 23 608 630 608 630 0.97 8 23 0.007 0.64 11.6 9.3 1 23 636 658 636 658 0.99 9 23 4e-05 0.0037 18.6 6.6 1 23 665 687 665 687 0.99 10 23 0.24 22 6.7 6.1 1 23 693 724 693 724 0.98 11 23 0.23 21 6.8 0.8 8 23 738 753 731 753 0.92 12 23 0.23 21 6.8 0.8 8 23 767 782 760 782 0.92 13 23 0.23 21 6.8 0.8 8 23 796 811 789 811 0.92 14 23 0.23 21 6.8 0.8 8 23 825 840 818 840 0.92 15 23 0.23 21 6.8 0.8 8 23 854 869 847 869 0.92 16 23 0.23 21 6.8 0.8 8 23 901 916 894 916 0.92 17 23 2.6e-05 0.0024 19.2 0.2 1 23 922 944 922 944 0.93 18 23 3e-06 0.00028 22.2 0.0 1 23 950 972 950 972 0.98 19 23 1.8e-05 0.0017 19.7 1.2 1 23 978 1001 978 1001 0.95 20 23 9.7e-05 0.0089 17.4 1.8 1 23 1007 1030 1007 1030 0.96 21 23 4.5e-05 0.0041 18.5 1.1 2 23 1037 1058 1036 1058 0.97 22 23 3.2e-05 0.003 18.9 1.0 1 23 1064 1086 1064 1086 0.97 23 23 0.0053 0.49 12.0 0.2 1 23 1092 1116 1092 1116 0.94
Sequence Information
- Coding Sequence
- ATGAACCGTGTTGCAAATTGCTTCATTTGCAGCACCACCACTGGTGCTACTAACACCATCAGTCTTATACAAGATACTAGCAACCTTCAATCTGGCAAGAAACTACTGGACATAGTGAGTGAGATTGCTGAGAAACCTTTGCAAGAGGAAGACATACAATCCACAGTCATTTGCAAGAAATGTAGCCAGACGTGCAAGGAATATGATGACTTGCAAGTCAGGCTGAAGCACATCAAAACCGAGCTCCACGGGCAGATACACAAGACCAGCGAGAGCCCCACGAAGACAGAGGCCAGGAAAGTGGTGTTGCCGGCCTCCAAGCTGCACCCGCTGCCGCCGGACTTCGTGCTCAACGTCGGCCGGCTAGCGGGGAATGCCGGCCTCGTCACTCCCAAAAACAAGATAACACCATCAACACTAAGCCTAAAAGTCACGGTTGGTTCCTCAGTACTGACCCAATGCATCAAAACCACTACAGCGGTACCCAAAAACATTGTTATTCAGAAGCAGGAGGCAACTGAAACTGAGGAGACGTCCGAAGACTTGATGTTTGAGGAGACAAGTCTGCCGAAGGATTTCATGACATCCATGGTGCTGCAGCGGATAGCTCAGGATGGGGATGCCAACAATGATGATCAGCCTATGGAGATTGATGAAGATTGTTCATATGCGATAGTATCTCAAGAGGAGGGCACAAGCGAAGGAACTAAAAAGAAAGCCGATGATGCATCAGACATGTTCGACGTGAGCTTGCTCTCGTCATTAGAGGACAGCGGCGATGGCGAGCAGCAGAGCGACCAGTACATCGTGGGGAAGCTGGAGATACTCAGCGAGAGGGAGGAGGAAGACGACGAGGAGGAACAAACCATCGTGATGTCCAGCGACAACTCGATCCTTCGGGTCGTGTCGGGTCAAAAGCTGGTCTACAGCGACTCCGGCCTGACGCTGCTCGACGACAACGACAACGACAACGACGGCCAACCCGACAGCCAAGatgaagacgATTCACAAATAGAACTCCAGGTCTCCGGAGATGAAGAGACTGCGAACGCCATCATAGCTGCGGCTAGGGAACAAGGTGGTGCATTCATAAAGGTGCAGTCGGGAGAGATGTATCGTGTGAAATCGGTACAGAGCAAGTCCAAGGAAGAAGATGACAAAGAGTTCACAGATCACTTGCAGATTGTGGTGAAAGAGGACGGGTTGTTCAAATGTGTGTTGTGCAAGAAGAATAAAAATAAAGGAGAGCGAACAAGTCGGTTCACCGGCGATGCGGAGTTCATCATGCGGCACATGCGCGTGCAGCATGACGCGCGCGTCTACATCTGCAGCACGTGCGGCCTGGCCTTGCGGCGCCGAGACCACTACATACAGCATATAGGTACATGTTACATGCGCGTGCAGCACGACGCGCGCGTCTACATCTGCAGCACGTGCGGCCTGGCCTTGCGGCGCCGAGACCACTACATACAGCATATAGGTACATGTTACATGCGCGTGCAGCACGACGCGCGCGTCTACATCTGCAGCACGTGCGGCCTGGCCTTGCGGCGCCGAGACCACTACATACAGCATATAGGTACATGTTACATGCGCGTGCAGCACGACGCGCGCGTCTACATCTGCAGCACGTGCGGCCTGGCCTTGCGGCGCCGAGACCACTACATACAGCATATAGGTACATGTTACATGCGCGTGCAGCACGACGCGCGCGTCTACATCTGCAGCACGTGCGGCCTGGCCTTGCGGCGCCGAGACCACTACATACAGCATATAGCACAGCACGCGAAAGAAAATTCAACACAAGACAAGAACAAGTTACACGAATGCAACGTCTGTCATAAAAAATACAGTTCCAAGACCCTGCTAGTGGAGCATATGAACCTGCATAACGGACAGCGACCATACACGTGTCATATATGCCACAAGAGTTTCGCTTCCAAGTACACGCATCAGTCACACCTCAAAACGCATTTGGACCGGCCGCGACCCTTCAAGTGTGCGGACTGCGGCAAGTGCTTCTTCACGCTGCAGAACCTCAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGTGTGCGGACACCTACATTACTTGGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTCAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTGAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTCAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTGAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTCAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTGAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACAACCTGAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGCTGCGGCCTACAAGTGCTTCTTCACGCTGCAGAACCTGAACCAGCACCACAAGACGCACTCCGGCCTCAAGGAGTTCGAGTGCAACGTGTGCGGCAAAGCATTCGGGACACAACACAACTTGGAGATGCACGGTGTAGTGCACTCGGGACAGAAACCGTTCGTGTGCGGGGTTTGTGGGAAGGCCTTTGCGCGACGCGCAGAGGTCAAAGATCACATGAGGATACATACAGGTGAACGTCCTTTCGCGTGCGACGTGTGCGGGGCGACGTTTTCGCAGCGGTCGAACCTCCACTCGCACAAGCGCGCCACGCACTACGACGACAAGCGGTACAAGTGCGACCAGTGTCCCAAGCGGTTCAAGAGACGCAGATTATTGGACTACCACATAAAGGCGTCTCACACGGGCGAGCGGCCGCTGAAGTGCGAGGTGTGCAAGGCCACGTTCGTGTATCCCGAGCACTACAAGAAACACATCCGGATACACAGCGGTGAAAAACCTTACGTTTGCGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCGTACGAGTGTCTCGTGTGCGGCGCCGGCTACATGAGGAAGCAGCTGCTCTACACACACATGAACACTAGTGGTCACTTGGCAGAGTCGATAGTGGTGAACCAGCCGCGCGTCACTATACAGCGCGTCGCTGACAGCGCGCCCGGAGATAACGTTTACGAGTCTACGGAGGAGTTAGAATTAGAAAATGAGGGAACAAAGACTAGTGATGGTGGACGCGAGCGGCGGCATCGTGCGCGTCGTGCAGATCACGCTGCCAGACGGCAACAACGGCTGGGTGGCCATCAACCCGTGAACAACCGGCTGGGTGGCCATCAACCCGTGAACAACCGGCTGGGTGGCCATCAACCCGTGAACAACCGGCTGGGTGGCCATCAACCCGTGAACAACCGGCTGGGTGGCCATCAACCCGGCCATCAACCCGTGAACAGCAGACCTGCTTCGAGGATCCACGGTCTCGTCAACCTCGTGAACGCCACAGTCGGTAGCCGATTATCCTTTTGA
- Protein Sequence
- MNRVANCFICSTTTGATNTISLIQDTSNLQSGKKLLDIVSEIAEKPLQEEDIQSTVICKKCSQTCKEYDDLQVRLKHIKTELHGQIHKTSESPTKTEARKVVLPASKLHPLPPDFVLNVGRLAGNAGLVTPKNKITPSTLSLKVTVGSSVLTQCIKTTTAVPKNIVIQKQEATETEETSEDLMFEETSLPKDFMTSMVLQRIAQDGDANNDDQPMEIDEDCSYAIVSQEEGTSEGTKKKADDASDMFDVSLLSSLEDSGDGEQQSDQYIVGKLEILSEREEEDDEEEQTIVMSSDNSILRVVSGQKLVYSDSGLTLLDDNDNDNDGQPDSQDEDDSQIELQVSGDEETANAIIAAAREQGGAFIKVQSGEMYRVKSVQSKSKEEDDKEFTDHLQIVVKEDGLFKCVLCKKNKNKGERTSRFTGDAEFIMRHMRVQHDARVYICSTCGLALRRRDHYIQHIGTCYMRVQHDARVYICSTCGLALRRRDHYIQHIGTCYMRVQHDARVYICSTCGLALRRRDHYIQHIGTCYMRVQHDARVYICSTCGLALRRRDHYIQHIGTCYMRVQHDARVYICSTCGLALRRRDHYIQHIAQHAKENSTQDKNKLHECNVCHKKYSSKTLLVEHMNLHNGQRPYTCHICHKSFASKYTHQSHLKTHLDRPRPFKCADCGKCFFTLQNLNQHHKTHSGLKEFECNVCGHLHYLAAAYKCFFTLQNLNQHHKTHSGLKEFECNAAAYKCFFTLQNLNQHHKTHSGLKEFECNAAAYKCFFTLQNLNQHHKTHSGLKEFECNAAAYKCFFTLQNLNQHHKTHSGLKEFECNAAAYKCFFTLQNLNQHHKTHSGLKEFECNAAAYKCFFTLQNLNQHHKTHSGLKEFECNNLNQHHKTHSGLKEFECNAAAYKCFFTLQNLNQHHKTHSGLKEFECNVCGKAFGTQHNLEMHGVVHSGQKPFVCGVCGKAFARRAEVKDHMRIHTGERPFACDVCGATFSQRSNLHSHKRATHYDDKRYKCDQCPKRFKRRRLLDYHIKASHTGERPLKCEVCKATFVYPEHYKKHIRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKQLLYTHMNTSGHLAESIVVNQPRVTIQRVADSAPGDNVYESTEELELENEGTKTSDGGRERRHRARRADHAARRQQRLGGHQPVNNRLGGHQPVNNRLGGHQPVNNRLGGHQPVNNRLGGHQPGHQPVNSRPASRIHGLVNLVNATVGSRLSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -