Acap034223.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392523.1:13892171-13921574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.011 0.99 11.0 0.3 1 23 251 274 251 274 0.96 2 34 0.34 31 6.3 4.0 1 23 282 304 282 304 0.96 3 34 6.9 6.3e+02 2.2 0.1 1 23 308 330 308 330 0.96 4 34 0.63 57 5.4 6.3 1 21 406 426 406 430 0.90 5 34 0.63 57 5.4 6.3 1 21 455 475 455 479 0.90 6 34 0.63 57 5.4 6.3 1 21 504 524 504 528 0.90 7 34 0.63 57 5.4 6.3 1 21 553 573 553 577 0.90 8 34 0.63 57 5.4 6.3 1 21 602 622 602 626 0.90 9 34 0.63 57 5.4 6.3 1 21 651 671 651 675 0.90 10 34 0.63 57 5.4 6.3 1 21 700 720 700 724 0.90 11 34 0.63 57 5.4 6.3 1 21 749 769 749 773 0.90 12 34 0.63 57 5.4 6.3 1 21 798 818 798 822 0.90 13 34 0.63 57 5.4 6.3 1 21 847 867 847 871 0.90 14 34 0.63 57 5.4 6.3 1 21 896 916 896 920 0.90 15 34 0.63 57 5.4 6.3 1 21 945 965 945 969 0.90 16 34 0.016 1.4 10.5 1.0 2 21 1043 1062 1043 1063 0.92 17 34 0.0036 0.33 12.5 0.9 2 23 1079 1100 1078 1100 0.94 18 34 0.00044 0.041 15.4 0.3 1 23 1105 1127 1105 1127 0.98 19 34 0.00044 0.041 15.4 0.3 1 23 1136 1158 1136 1158 0.98 20 34 0.00044 0.041 15.4 0.3 1 23 1167 1189 1167 1189 0.98 21 34 0.00044 0.041 15.4 0.3 1 23 1198 1220 1198 1220 0.98 22 34 0.00044 0.041 15.4 0.3 1 23 1229 1251 1229 1251 0.98 23 34 0.00044 0.041 15.4 0.3 1 23 1260 1282 1260 1282 0.98 24 34 0.00044 0.041 15.4 0.3 1 23 1291 1313 1291 1313 0.98 25 34 0.00044 0.041 15.4 0.3 1 23 1322 1344 1322 1344 0.98 26 34 0.00044 0.041 15.4 0.3 1 23 1398 1420 1398 1420 0.98 27 34 0.00044 0.041 15.4 0.3 1 23 1429 1451 1429 1451 0.98 28 34 0.00044 0.041 15.4 0.3 1 23 1460 1482 1460 1482 0.98 29 34 0.00044 0.041 15.4 0.3 1 23 1491 1513 1491 1513 0.98 30 34 0.00032 0.029 15.8 4.5 1 21 1522 1542 1522 1547 0.94 31 34 0.0017 0.16 13.5 1.7 1 23 1555 1578 1555 1578 0.92 32 34 0.0072 0.66 11.5 0.3 1 23 1584 1607 1584 1607 0.96 33 34 0.058 5.3 8.7 0.4 3 19 1621 1637 1619 1638 0.89 34 34 0.02 1.8 10.2 1.2 1 23 1651 1674 1651 1674 0.98
Sequence Information
- Coding Sequence
- ATGAGGGAGATTAACATAAATATCGAAGGTTATAATGTGAACGGTATATGCGTGGGTTGTTTGAATTACAATCGGAAAATGTTTTATTGTGAACAAATTAAAGAATGTTTGAAATTACTTGGAAACATCGATGTGCCGGACGGACTCCAGGTGCAGGTGTGCTGGGAGTGCCTCGCTTCAGTCCGGGCTGCTCTCCGGTTCCGGAACCTCATCATCAGCTCGTATGAAGTGCTCATTGATTACTCCAGACAGCACACATTCCTCAACTGTCCCTCGGACCTGTCCGCGCATGCGCGCGAGCGTATCTCCGCCACCACCACCGAGACGTCAACTATCCAAGCCCCGCAGGACACACAGGACTCGCATATCGAGGTCGACGTCAGCGTGGTCAAGGAGGAGACCAAGGAGGAGCTGGAAGAATCAGAAGCGGTCAAGTCAGAGACGGAATACTTTGAGAACACAGACTTCCCCCAAGACGACCGGGCGTCGTCGGAGGACGACTTGCAACTCTCCAGACTGAAGAAGAAAAAGGAGAGAAGGACCAAGAAGGTGAAGAAGAAGAAGAGAGAAGAGCGGCAGAAGCTCAAGAGTATCGAGACTGACATTAAAACGGAAAAGGTCGAGCAACGCAACTTCAGAAAGCTAAAGAACTTACCACCAGACCTGGTGGAGTTGTACATGATGACCGAAGAAGAGATGTGGCAGATCAGACAAGAAGATGTCTCCAGTGCGGAGTTCTGTGCTCTCAAGTACAAGTGTAGTGACTGTGTCATCGGATTCAACTCGGAGAAGCTAATGAACGATCATATGCAGGGGAAGCATGTTCCGAAAAGCCCGGAGTGCCACCAGTGCGACGTGTGCAAGGCGTACTTCCTGACGCGCGACAACCTGTGCAAGCACCGCGCGCTGCACCTCGCCGCCTACCGCTGCGGCGCGTGCGGCGCGCGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCGCCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGATTAGTGTGCCGCACGTGCGGGGAACAGTTCAGGCGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCACCGCGCTCAAGCGACGCATGCAGGCGCACGCGCGGGCACATACCGGGGGCGGACAAGTGTGCCGCACGTGCGGGGAACAGTTCAGGTGAGCCACCCGTGCCACGTGTGCAAGGCGTGCTTCCTGACGAGCGACAACCTGTGCAAGCGCCGCGCTACCTACGCTTTTGGGGATATAGTTCGTCACACCACAAAGTCAAAGTTGGCGTACCACAAGGGCGTGTGCAACCAGGCGCGCCCGCAATGCGACTGTTGCGGCAAAGTGTTCGCCAACAAGATGACGCTCAAGTACCATCTCAAGATTCTGCCTCAAAATAAAGAGGAAAAGCCGAAGGAGAGGCTCTTTATATCATGCAAGGGCTGCAGCAAGGTGTTCCACTCCAAGAAGGCGTACCGAGCACACGTCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGGTACACTCCTAGTATGTGTATGTATCTGCAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGGTACACTCCTACGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCATAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGCGTGATCCACAACGGAGTGACGTACCCCTGCCCGATCTGCGGGAAGCTGTTCCAGTGGAAGCGGAACCTGGCGCGCCACACCAGGAACCACAGGGATCGCGACGCAGGCGCCACGCACGAGTGCAGGGACTGCGGCAAGGTGTTCAGCAGCCGCGACTGCTACAACAACCACATGAAGCTCAGCAAGCGGCACGTGCACGAGGACGCCTATGTCCACGAGTGCTCGTACTGCGGCAAGAAGTTTGCGACCAAGTGGTGCATGGTGGACCACATCGACTGGGACCATCTGAAACGGATCAAGTACCAGTGCAGCGTGTGCTTCAAGGCATTCAAGACGGCGAAGATAATGGTGGCGCACATGAACAACATACACGAGGGCAAGAAGAACAGGGAGCCGGAGAGCGAGCATCTCTGTGAGATCTGCGGCAAGTCGTACAAGACAGTGAAGCGGCTGAAGGGTCACGTGTGGGCGATGCACACGAACCGCTCCACGAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACGTTCACCTGGCAGACCTCCATCTACAAGCACATGAAGATGATGCATGACAACAAGCGGCCTAAGCAACTCCGGCCGCTGCCCGTGAAGAAGCAGGAGGCTGGCTACCCGGCCGAGCCGCGCACCTACTTCCCGCCCGCGCCGCACCTGCCGCTACACAACATCGTGCACAATATGGTGTAG
- Protein Sequence
- MREININIEGYNVNGICVGCLNYNRKMFYCEQIKECLKLLGNIDVPDGLQVQVCWECLASVRAALRFRNLIISSYEVLIDYSRQHTFLNCPSDLSAHARERISATTTETSTIQAPQDTQDSHIEVDVSVVKEETKEELEESEAVKSETEYFENTDFPQDDRASSEDDLQLSRLKKKKERRTKKVKKKKREERQKLKSIETDIKTEKVEQRNFRKLKNLPPDLVELYMMTEEEMWQIRQEDVSSAEFCALKYKCSDCVIGFNSEKLMNDHMQGKHVPKSPECHQCDVCKAYFLTRDNLCKHRALHLAAYRCGACGARTALKRRMQAHARAHTGGGQVCRTCGEQFSVPHVRGTVQVSHPCHVCKACFLTSDNLCKRRAQATHAGARAGTYRGRISVPHVRGTVQASHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKHRAQATHAGARAGTYRGRTSVPHVRGTVQVSHPCHVCKACFLTSDNLCKRRATYAFGDIVRHTTKSKLAYHKGVCNQARPQCDCCGKVFANKMTLKYHLKILPQNKEEKPKERLFISCKGCSKVFHSKKAYRAHVVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHRYTPSMCMYLQRDPQRSDVPLPDLREAVPVEAEPGAPHQEPQVHSYVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHSVIHNGVTYPCPICGKLFQWKRNLARHTRNHRDRDAGATHECRDCGKVFSSRDCYNNHMKLSKRHVHEDAYVHECSYCGKKFATKWCMVDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHEGKKNREPESEHLCEICGKSYKTVKRLKGHVWAMHTNRSTSKSFKCKLCPATFTWQTSIYKHMKMMHDNKRPKQLRPLPVKKQEAGYPAEPRTYFPPAPHLPLHNIVHNMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -