Acap004006.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- Sp4
- Assembly
- GCA_947623375.1
- Location
- OX392504.1:22903379-22938346[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00095 0.087 14.3 2.7 1 23 753 777 753 777 0.97 2 13 1.8e-06 0.00016 22.9 1.7 2 23 784 807 783 807 0.93 3 13 1.6e-06 0.00015 23.0 1.3 1 23 813 835 813 835 0.98 4 13 1.6e-06 0.00015 23.0 1.3 1 23 862 884 862 884 0.98 5 13 1.6e-06 0.00015 23.0 1.3 1 23 911 933 911 933 0.98 6 13 1.6e-06 0.00015 23.0 1.3 1 23 960 982 960 982 0.98 7 13 1.6e-06 0.00015 23.0 1.3 1 23 1009 1031 1009 1031 0.98 8 13 1.6e-06 0.00015 23.0 1.3 1 23 1058 1080 1058 1080 0.98 9 13 1.6e-06 0.00015 23.0 1.3 1 23 1107 1129 1107 1129 0.98 10 13 1.6e-06 0.00015 23.0 1.3 1 23 1156 1178 1156 1178 0.98 11 13 1.6e-06 0.00015 23.0 1.3 1 23 1205 1227 1205 1227 0.98 12 13 1.6e-06 0.00015 23.0 1.3 1 23 1254 1276 1254 1276 0.98 13 13 0.0089 0.82 11.3 0.3 1 16 1303 1318 1303 1320 0.94
Sequence Information
- Coding Sequence
- ATGTCGTCTGAGCCTACTAAAGTGCAGTTGGAATACATTAACGAGGACAAAACGGGCAAGGAGGGCAGCGGCACACAGTCGCCCCTAGCACTACTGGCCGCCACGTGCAGCCGCCTCGGCGCCGCCGGCATGGGGCCCGACCAGGACAAGGAGGCGCAGCAGCACTTCAGTCCGCAGCAACAAACGCAGCAGCAACAGGTGCAACAACAGGCGCAACAACAGGCGCAACAGCAAGCGCAACAGCAGGCGCAACAGCAGGCGCAACAACAGGCGCAACAGGCTCAGCAACAGGCGCAGCAACAAGCGCAGCAGCAACAGCAGCAGCAGCTGATACAGCAACAGGTGCAGAGTGAAGCGGCCACGCTCGCCGCGATCCAACAGCAGTATTTGCAGCAACAGCCACAGCTGAGGGTCATCAGCTCGGCGGTCGTCCAACAGCTCCGTGCACAAGGACTCTCTGGAAATGAACTGTCAGCGGCCATCGCGAACGCGGCAAACTCCGTCCCCAATGGCATTCAAGTCCAACAGCCCCAGGTGATCTCGATGCAGCAGCTGCAGTCGCTGCTGGGCGGCGGCGTGGTGTCCAGCGGCGAGGGCGCCACCTACCAGAACAGCCCGCAGCAACTGCTGCAGATACACCCGCAGCTGTTACAGCAACAAGCGGGCGGGTTGTATGGCGGCTGCGTGCAGCCCATGCAGGCGGTCACCGTGGACGGGCAGGACGCGCTCTTTATACCGGCGCAACACTCGCAGAACTTCTCAGGCATGGGGCAAGTCAGCCTGGTGAACGGGCAGCTGGTGCGAACGCCCGTGCTGCCGGCCGGCTTCCTGCAAAACGTGATGCACCTACCCACCGAACAACAGGCCACGGTGACGATACCGGGCACTAACATATCGATACCGCTAACCGCCTTGACCGGGAACCAAATGATATCGATACCCGGCTCGAATATAATCCAGGGCGGTATATCGATACCGACCAGTCAGCCTATATCGATACCGACGAGTCAGGCCATATCGATATCGTGTTCCGTGCCCGCCGAGAAGCCCAAGGACAAAGCGGAGGGCAGCCCTACGCAACAAGGTGGCGGCGTGGCGGTGCGCGGCGGCGTGGGCAGCATGGGCATGGTGCCCGTGCAGGTGCCCGTCAGCGTGGCCAACGGACACACCGTCTACCAGACCGTGCATCTGCCCGTGCACGCGCCGCAGCATCTGCAGATCATACCGCAGCTGCAGCAGGCGCTCGCCTCATCACTGCTACCAGACCGTGCATCTGCCTGTACACGCGCCGCAGCATCTGCAGATCATACCGCAGCTGCAGCAGGTGAGATGGTACCGAGCGAGCGAGAGAGATTGATGTACACCCTCATACTGTCGAAGGTGGTTGAAGGCGCTCGCCTCATCACTGCTACCAGACCGTGCATCTGCCTGTACACGCGCCGCAGCATCTGCAGATCATACCGCAGCTGCAGCAGGCGCTCGCCTCATCACTGCTACCAGACCGTGCATCTGCCCGTGCACGCGCCGCAGCATCTGCAGATCATACCGCAGCTGCAGCAGACCGTGCATCTGCCCGTGCACGCGCCGCAGCATCTGCAGATCATACCGCAGCTGCAGCAGATGCAGCAGCCACAAATGGCGAACTTACTCACGCCCTCGGGACAGATACAGCAGATTCAGATAGCGTCGTTGGCCAATGTCCAGCAGAACGGAGGCAGCCAGGCCACCGCCAGCGCCACGCAGACTCCGGGCACCATCACGCTACAGAACCCGATGCAGTCTGACACGACGGCGATACAGCAGCAACCGTCGCAGACCATCATCACCAGCACGCCCACCGGCCAGCAGCTCACCGTCATACCCGCCACCAACAACGTGCGGCCTGCCAATGTCGTTCAGATGCCGACGTTAGGAGTGGGCGGTATCGGCGGCGCGGTACAACTGGTCCCGGCGCTCGGCTTGCCCGGCGTGCAGATCGCGCAGCTCCCTCAGGCGCAGCCGCAACCGCAGCCCGTTATAGGTCAGCAAGTCCAGCAGGATCCCAATGATCCGGGCAAATGGCAGCTGGTGACGGTCAGCAACAACAGCAACAATAGCAACAACAGCAACAACAGCGGCAACACTTCTGGCACCGAGTGTGAGAATGGAAAGCAGCGGGCGGCCAGTCCGAGCGGCAAGAGGATGATGAAGAGGGTGGCTTGCACATGCCCTAACTGTGATCAAGGGGAGAACCGACTGGTGGACCGCAAGAAGCAGCACGTGTGCCACATCGCGGGCTGCAACAAGGTGTACGGCAAGACGTCGCACCTGCGCGCGCACCTGCGCTGGCACACCGGCGAGCGGCCATTCCTGTGCAACTGGCTGTTCTGTGGCAAGAGATTCACTCGGTCGGACGAGCTGCAGCGGCACCGGCGCACGCACACCGGCGAGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGGCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGGCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGTCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGTCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGTCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGTCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGTCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGGCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGGCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGCCAAGCACGTGCGCATACACACCAAGAACCGCATCACGGTATGGCTGCACACACATCACACCGTTACTCGTGTTCTTACTGTTGTGCCGCTGAAGCGGTTCGAGTGCCCGGAGTGCAGCAAGCGGTTCATGCGCTCCGACCACCTCGACACTGAGGTAGCAACATCAACGCAGTCCATGTACTCCGACTCGGGCGACGACAGCTGCGACGAGAAGATGATGCTGACCATCGAGACCATCCATCCCGAAGGCGACGGCGAAGAGAAGCAGCTAGTGATGATCCGGCCCGGCGGCAAGCTCGACCCCGACCACGACAGCTAG
- Protein Sequence
- MSSEPTKVQLEYINEDKTGKEGSGTQSPLALLAATCSRLGAAGMGPDQDKEAQQHFSPQQQTQQQQVQQQAQQQAQQQAQQQAQQQAQQQAQQAQQQAQQQAQQQQQQQLIQQQVQSEAATLAAIQQQYLQQQPQLRVISSAVVQQLRAQGLSGNELSAAIANAANSVPNGIQVQQPQVISMQQLQSLLGGGVVSSGEGATYQNSPQQLLQIHPQLLQQQAGGLYGGCVQPMQAVTVDGQDALFIPAQHSQNFSGMGQVSLVNGQLVRTPVLPAGFLQNVMHLPTEQQATVTIPGTNISIPLTALTGNQMISIPGSNIIQGGISIPTSQPISIPTSQAISISCSVPAEKPKDKAEGSPTQQGGGVAVRGGVGSMGMVPVQVPVSVANGHTVYQTVHLPVHAPQHLQIIPQLQQALASSLLPDRASACTRAAASADHTAAAAGEMVPSERERLMYTLILSKVVEGARLITATRPCICLYTRRSICRSYRSCSRRSPHHCYQTVHLPVHAPQHLQIIPQLQQTVHLPVHAPQHLQIIPQLQQMQQPQMANLLTPSGQIQQIQIASLANVQQNGGSQATASATQTPGTITLQNPMQSDTTAIQQQPSQTIITSTPTGQQLTVIPATNNVRPANVVQMPTLGVGGIGGAVQLVPALGLPGVQIAQLPQAQPQPQPVIGQQVQQDPNDPGKWQLVTVSNNSNNSNNSNNSGNTSGTECENGKQRAASPSGKRMMKRVACTCPNCDQGENRLVDRKKQHVCHIAGCNKVYGKTSHLRAHLRWHTGERPFLCNWLFCGKRFTRSDELQRHRRTHTGEKRFECPECSKRFMRSDHLAKHVRIHTKNRITVWLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVWLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVCLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVCLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVCLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVCLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVCLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVWLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVWLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLAKHVRIHTKNRITVWLHTHHTVTRVLTVVPLKRFECPECSKRFMRSDHLDTEVATSTQSMYSDSGDDSCDEKMMLTIETIHPEGDGEEKQLVMIRPGGKLDPDHDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -