Basic Information

Insect: Apotomis capreana
Gene Symbol: -
Assembly: GCA_947623375.1
Location: OX392501.1:27052853-27062087[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.056 5.2 8.7 1.6 1 23 149 171 149 171 0.96

2 17 0.0041 0.38 12.3 0.1 4 19 181 196 178 198 0.89

3 17 1.1e-05 0.00097 20.5 0.8 2 23 210 231 209 231 0.97

4 17 0.0002 0.018 16.4 0.3 3 23 239 259 238 259 0.97

5 17 0.58 53 5.6 4.5 1 15 267 281 267 290 0.73

6 17 1.7e-07 1.5e-05 26.1 2.8 1 23 295 317 295 317 0.98

7 17 0.0027 0.25 12.9 2.5 1 23 324 346 324 346 0.98

8 17 3.9e-06 0.00036 21.8 3.0 1 23 352 374 352 374 0.98

9 17 0.0001 0.0092 17.4 0.7 1 21 380 400 380 401 0.96

10 17 0.00056 0.051 15.0 3.9 2 23 404 426 403 426 0.94

11 17 3.1e-05 0.0029 19.0 2.1 2 23 435 456 434 456 0.97

12 17 6.4e-05 0.0058 18.0 0.6 2 23 462 483 462 483 0.97

13 17 0.0002 0.018 16.5 3.5 1 23 491 514 491 514 0.95

14 17 5.3e-07 4.8e-05 24.6 0.4 1 23 519 541 519 541 0.97

15 17 0.0061 0.56 11.8 0.2 1 23 548 570 548 570 0.98

16 17 7.8e-06 0.00071 20.9 0.5 1 23 576 598 576 598 0.98

17 17 3.4e-05 0.0031 18.9 0.6 1 23 604 626 604 626 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.056	5.2	8.7	1.6	1	23	149	171	149	171	0.96
2	17	0.0041	0.38	12.3	0.1	4	19	181	196	178	198	0.89
3	17	1.1e-05	0.00097	20.5	0.8	2	23	210	231	209	231	0.97
4	17	0.0002	0.018	16.4	0.3	3	23	239	259	238	259	0.97
5	17	0.58	53	5.6	4.5	1	15	267	281	267	290	0.73
6	17	1.7e-07	1.5e-05	26.1	2.8	1	23	295	317	295	317	0.98
7	17	0.0027	0.25	12.9	2.5	1	23	324	346	324	346	0.98
8	17	3.9e-06	0.00036	21.8	3.0	1	23	352	374	352	374	0.98
9	17	0.0001	0.0092	17.4	0.7	1	21	380	400	380	401	0.96
10	17	0.00056	0.051	15.0	3.9	2	23	404	426	403	426	0.94
11	17	3.1e-05	0.0029	19.0	2.1	2	23	435	456	434	456	0.97
12	17	6.4e-05	0.0058	18.0	0.6	2	23	462	483	462	483	0.97
13	17	0.0002	0.018	16.5	3.5	1	23	491	514	491	514	0.95
14	17	5.3e-07	4.8e-05	24.6	0.4	1	23	519	541	519	541	0.97
15	17	0.0061	0.56	11.8	0.2	1	23	548	570	548	570	0.98
16	17	7.8e-06	0.00071	20.9	0.5	1	23	576	598	576	598	0.98
17	17	3.4e-05	0.0031	18.9	0.6	1	23	604	626	604	626	0.97

Sequence Information

Coding Sequence: ATGCTGGAAAGGAAAACGCTAGCCGATACAAGCGTGATGAATCAGAGGACAAGGGGAATGAGGGCGGTGGAGGAGGTGGGAAAGGCGGCGATGGAAATGGAAAGGGAGGCGGCTCAGGTGATGGGAAAACCGCCGGAGGGAATGGTGAACGCCACCGAAGATCTCCTGGCGGGTTCAACTTCAAGAGTAAAGGCGGTAAAGGTGGAGGCGGAGGTTATAGCGGTGGTGGGGGAAATGGCGGTGGCAGGGGATGTGGCTGTGGCAGGGGGCATGGCGGTGGCGGGGGATATGGCAGTGGTGGGGGATATGGCGGTGGCGGGGGATATGGCGGTGGCGGGGGATACGGCGGTGGCGGGGGATAGTCGATTAGCACACAATCCAGGGCCTAGAAAGAAGTATGCGAAGCCGGTGTTAAAATTAAAGAAAGTCAGAAAAAGGTTTCATTACACATGTGAGTTATGTTACAAGAAGTTTGGCTTTAGAGAGCGTTTTGAAGCCCACAAGCTGGAACATGAGGGGAAAATAACATCAATATACTGTGTCCCATGCAACAAAACCTTCACGACCTGGGGCGGGCTGAAGCGTCACAACGACTGTGAGCACACTAGACTGACCCTCGAACAGCTGACATGCCAGTTGTGCTCCAAGGTGTTCAAGAGCCCGCGGACTCTAGCCATACATCGCCGAACCCATGGCGAGAGGAAGCTGCGGATATGTGACATTTGCGGAAAGGGCTTCAAAAGCGATTTAACTTTGAAGTCTCACCTAGAAACGCATATAGAAAACCGTGAGCGACGTTACACATGCCAACATTGCGGAAAGAAGTTTCTCAGTAAAAAGACGTGCGCGTCCCACGCGTCGAGGCGCCACAGCGACCGCCGCTACATCTGCCACCACTGTGACTACCCCTTCACTGATAAGAGCAACCTCGCCAAACACGTGCGGATCCACGAAGGGAAGCAAAAGCTGCACAAATGTGATTTATGCTTGAAAACATTCGCAGCACACTCGTCTCTAGTCATCCACAAAAGAATCCACACTGGTGAGAAACCTTTTTCATGCAGCTATTGCCCGAAAAGTTTCTCCAATAAACGCATGTTGGTGGACCATCACAGGATACATACGGGGGAGAAGCCACACAAGTGCGCGGTCTGCGAGCAGAGCTTCACGCAGCGCGGGACCATGAAGCGGCATATGAAGGCGCCAATACAATGCAAGACATGCAACAAAACCTTCAAGCACTGGAGCGGGCTGCGCTGCCACATCGAGTCTGTGCACTCGCTGCTGCCCTTCAGGGAGGTGACGTGCCCGGTGTGCTGCAAGGTGTACAAGTCGTCGTCCACACTTAAAGCGCACCAGCGGACGCATCAGAAACGGGAGCGGGTGTGCGAGGAGTGTGGGAGGACGTTTAAAAGTGACGTCACTTTTAAGAACCACCTAGAAACCCACATAAAGAACCGCGAACGCAACTTCACATGCGAGCACTGCGGCCGAAAGTACATCAGCAAGAAAACCCTCGCGAAACACGTGTACCGCCGACACACAGACAGACAGTTCATATGCAACTACTGCAACTACATCTTCACCGATAAAGCTAACCTCATCCGGCATATAATGCTCCACGAAGGCCGGCACCCTAAGTTCGAATGCGACGTGTGTTCCAGGCTGTTGACTTCCCAAGCTTCGCTAGTGCTTCATAAAAGGATTCACAGCGGTGAGAAGCCGTTTCCTTGCGCGCATTGCGGGAAGAAGTTTTCGGATAAGGCGGTGCTGACGGAGCACGAGCGCGTTCACACAGGAGAGAAGCCGTTCGCGTGCGCGCTGTGCGAGCTGCGGTTCGCGCGCCGCAGCTCCATGCGCCGGCACATGAAGGTGCACAAGTAA
Protein Sequence: MLERKTLADTSVMNQRTRGMRAVEEVGKAAMEMEREAAQVMGKPPEGMVNATEDLLAGSTSRVKAVKVEAEVIAVVGEMAVAGDVAVAGGMAVAGDMAVVGDMAVAGDMAVAGDTAVAGDSRLAHNPGPRKKYAKPVLKLKKVRKRFHYTCELCYKKFGFRERFEAHKLEHEGKITSIYCVPCNKTFTTWGGLKRHNDCEHTRLTLEQLTCQLCSKVFKSPRTLAIHRRTHGERKLRICDICGKGFKSDLTLKSHLETHIENRERRYTCQHCGKKFLSKKTCASHASRRHSDRRYICHHCDYPFTDKSNLAKHVRIHEGKQKLHKCDLCLKTFAAHSSLVIHKRIHTGEKPFSCSYCPKSFSNKRMLVDHHRIHTGEKPHKCAVCEQSFTQRGTMKRHMKAPIQCKTCNKTFKHWSGLRCHIESVHSLLPFREVTCPVCCKVYKSSSTLKAHQRTHQKRERVCEECGRTFKSDVTFKNHLETHIKNRERNFTCEHCGRKYISKKTLAKHVYRRHTDRQFICNYCNYIFTDKANLIRHIMLHEGRHPKFECDVCSRLLTSQASLVLHKRIHSGEKPFPCAHCGKKFSDKAVLTEHERVHTGEKPFACALCELRFARRSSMRRHMKVHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -