Acap000859.1
Basic Information
- Insect
- Apotomis capreana
- Gene Symbol
- -
- Assembly
- GCA_947623375.1
- Location
- OX392514.1:19562503-19573019[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 53 0.014 1.3 10.7 0.4 2 23 16 38 16 38 0.94 2 53 0.0042 0.39 12.3 1.1 2 23 92 113 92 113 0.96 3 53 0.56 51 5.6 0.0 3 23 120 140 119 140 0.93 4 53 0.00085 0.078 14.5 0.3 1 21 146 166 146 167 0.94 5 53 8.9 8.1e+02 1.8 0.1 10 23 174 187 172 187 0.93 6 53 0.00085 0.078 14.5 0.3 1 21 193 213 193 214 0.94 7 53 8.9 8.1e+02 1.8 0.1 10 23 221 234 219 234 0.93 8 53 0.00085 0.078 14.5 0.3 1 21 240 260 240 261 0.94 9 53 8.9 8.1e+02 1.8 0.1 10 23 268 281 266 281 0.93 10 53 0.00085 0.078 14.5 0.3 1 21 287 307 287 308 0.94 11 53 8.9 8.1e+02 1.8 0.1 10 23 315 328 313 328 0.93 12 53 0.00085 0.078 14.5 0.3 1 21 334 354 334 355 0.94 13 53 8.9 8.1e+02 1.8 0.1 10 23 362 375 360 375 0.93 14 53 0.00085 0.078 14.5 0.3 1 21 381 401 381 402 0.94 15 53 8.9 8.1e+02 1.8 0.1 10 23 409 422 407 422 0.93 16 53 0.00085 0.078 14.5 0.3 1 21 428 448 428 449 0.94 17 53 8.9 8.1e+02 1.8 0.1 10 23 456 469 454 469 0.93 18 53 0.00085 0.078 14.5 0.3 1 21 475 495 475 496 0.94 19 53 8.9 8.1e+02 1.8 0.1 10 23 503 516 501 516 0.93 20 53 0.00085 0.078 14.5 0.3 1 21 522 542 522 543 0.94 21 53 8.9 8.1e+02 1.8 0.1 10 23 550 563 548 563 0.93 22 53 0.00085 0.078 14.5 0.3 1 21 569 589 569 590 0.94 23 53 8.9 8.1e+02 1.8 0.1 10 23 597 610 595 610 0.93 24 53 0.00085 0.078 14.5 0.3 1 21 616 636 616 637 0.94 25 53 8.9 8.1e+02 1.8 0.1 10 23 644 657 642 657 0.93 26 53 0.00085 0.078 14.5 0.3 1 21 663 683 663 684 0.94 27 53 8.9 8.1e+02 1.8 0.1 10 23 691 704 689 704 0.93 28 53 0.00085 0.078 14.5 0.3 1 21 710 730 710 731 0.94 29 53 8.9 8.1e+02 1.8 0.1 10 23 738 751 736 751 0.93 30 53 0.00085 0.078 14.5 0.3 1 21 757 777 757 778 0.94 31 53 8.9 8.1e+02 1.8 0.1 10 23 785 798 783 798 0.93 32 53 0.00085 0.078 14.5 0.3 1 21 804 824 804 825 0.94 33 53 8.9 8.1e+02 1.8 0.1 10 23 832 845 830 845 0.93 34 53 0.00085 0.078 14.5 0.3 1 21 851 871 851 872 0.94 35 53 8.9 8.1e+02 1.8 0.1 10 23 879 892 877 892 0.93 36 53 0.00085 0.078 14.5 0.3 1 21 898 918 898 919 0.94 37 53 8.9 8.1e+02 1.8 0.1 10 23 926 939 924 939 0.93 38 53 0.00085 0.078 14.5 0.3 1 21 945 965 945 966 0.94 39 53 8.9 8.1e+02 1.8 0.1 10 23 973 986 971 986 0.93 40 53 0.00085 0.078 14.5 0.3 1 21 992 1012 992 1013 0.94 41 53 8.9 8.1e+02 1.8 0.1 10 23 1020 1033 1018 1033 0.93 42 53 0.00085 0.078 14.5 0.3 1 21 1039 1059 1039 1060 0.94 43 53 8.9 8.1e+02 1.8 0.1 10 23 1067 1080 1065 1080 0.93 44 53 0.00085 0.078 14.5 0.3 1 21 1086 1106 1086 1107 0.94 45 53 8.9 8.1e+02 1.8 0.1 10 23 1114 1127 1112 1127 0.93 46 53 0.00085 0.078 14.5 0.3 1 21 1133 1153 1133 1154 0.94 47 53 8.9 8.1e+02 1.8 0.1 10 23 1161 1174 1159 1174 0.93 48 53 0.00085 0.078 14.5 0.3 1 21 1180 1200 1180 1201 0.94 49 53 8.9 8.1e+02 1.8 0.1 10 23 1208 1221 1206 1221 0.93 50 53 0.00085 0.078 14.5 0.3 1 21 1227 1247 1227 1248 0.94 51 53 8.9 8.1e+02 1.8 0.1 10 23 1255 1268 1253 1268 0.93 52 53 0.22 20 6.9 0.1 1 17 1274 1290 1274 1291 0.93 53 53 3.2e-06 0.0003 22.1 1.2 1 23 1305 1328 1305 1328 0.98
Sequence Information
- Coding Sequence
- ATGATGAACAGTGACACGACACCTCTTGACCCTCGCCTCAAGAACACATGCAACAAGTGCGGCGTGGAGTTCCCTCACCTCAGGCAGCTCGTGGAGCACGGCCGGGCGCAGCACCGCGCGCGGCGGAAGGCAAGCTGGCGGCTGCCCGGCGACTGCTTCCCCGCCAACTGCTACCACTGCGGCGTGGTGGTGAACAGTCGCTTGGAGCACTGGCGGCACGTGCGGCGCGCGCACCCCGCGCAGCGCGGCTCGTACCGCGCTGTTATAACCGCTGTCTGCGACGTCTGCGGGAAGGGCTTCCAGAACTCCACAAAGCTGCACCTGCACGAGCTGCGGCACGCGCCGCCCTCAGTCGCGTGCGGCGCGTGCGCGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAACTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTGGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCGGGTGAGTATAGAGCTGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTAGAGAGTAACGGCGGCAACTCACGGGTACACACTGGCATAACCCCGTACGAGTGTTCGATGTGCGGCAAGAAGTTCAAGTACTCGTCCAGCATGAACCTTCACGTTCGCACCGTGCACTACAAGCTGCCGCATCCGCCGAGGAAGAGGAAAAGCAAAAAATTGGACGAAAGCGATTATGGGAAATAA
- Protein Sequence
- MMNSDTTPLDPRLKNTCNKCGVEFPHLRQLVEHGRAQHRARRKASWRLPGDCFPANCYHCGVVVNSRLEHWRHVRRAHPAQRGSYRAVITAVCDVCGKGFQNSTKLHLHELRHAPPSVACGACARLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVSIELRLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLESNGGNSRVHTGITPYECSMCGKKFKYSSSMNLHVRTVHYKLPHPPRKRKSKKLDESDYGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -