Basic Information

Insect: Aporophyla nigra
Gene Symbol: -
Assembly: GCA_947507805.1
Location: OX382319.1:9312496-9322789[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5 3e+02 2.8 0.4 5 20 295 310 294 312 0.91

2 14 0.025 2.1 9.6 0.4 2 23 324 346 323 346 0.90

3 14 0.0032 0.27 12.4 0.1 2 20 384 402 383 404 0.94

4 14 3.2 2.7e+02 2.9 2.2 2 23 410 431 409 431 0.93

5 14 4.6 3.9e+02 2.4 0.9 1 9 697 705 697 715 0.81

6 14 0.29 25 6.2 3.6 1 23 729 751 729 751 0.96

7 14 0.21 17 6.7 1.3 2 23 757 778 756 778 0.94

8 14 0.65 55 5.1 0.3 1 23 801 822 801 822 0.79

9 14 0.00043 0.036 15.1 0.6 2 23 899 920 898 920 0.97

10 14 5e-07 4.2e-05 24.4 2.7 1 23 926 948 926 948 0.99

11 14 6.9e-05 0.0059 17.6 1.1 3 23 955 975 953 975 0.96

12 14 0.00094 0.08 14.1 0.4 2 23 982 1004 981 1004 0.95

13 14 0.81 69 4.8 0.2 2 19 1012 1029 1011 1030 0.81

14 14 0.00076 0.065 14.3 0.8 3 23 1043 1064 1042 1064 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5	3e+02	2.8	0.4	5	20	295	310	294	312	0.91
2	14	0.025	2.1	9.6	0.4	2	23	324	346	323	346	0.90
3	14	0.0032	0.27	12.4	0.1	2	20	384	402	383	404	0.94
4	14	3.2	2.7e+02	2.9	2.2	2	23	410	431	409	431	0.93
5	14	4.6	3.9e+02	2.4	0.9	1	9	697	705	697	715	0.81
6	14	0.29	25	6.2	3.6	1	23	729	751	729	751	0.96
7	14	0.21	17	6.7	1.3	2	23	757	778	756	778	0.94
8	14	0.65	55	5.1	0.3	1	23	801	822	801	822	0.79
9	14	0.00043	0.036	15.1	0.6	2	23	899	920	898	920	0.97
10	14	5e-07	4.2e-05	24.4	2.7	1	23	926	948	926	948	0.99
11	14	6.9e-05	0.0059	17.6	1.1	3	23	955	975	953	975	0.96
12	14	0.00094	0.08	14.1	0.4	2	23	982	1004	981	1004	0.95
13	14	0.81	69	4.8	0.2	2	19	1012	1029	1011	1030	0.81
14	14	0.00076	0.065	14.3	0.8	3	23	1043	1064	1042	1064	0.96

Sequence Information

Coding Sequence: ATGGCGGAAACGTCCAGAAAAAGGTCGAGAAAGACGAAGTTAGTGCCAAGAGACTATGCCGAAGAAGAAGATGATATTGAATTGCAGATTCCAGAGACGAAAATATCTAAAAGTATGAAACAGCCTCTTAACAAACTACTAACAAAAAAGTTAGTAGTTATACCACTAAAGAGAATCTTCACAAAACCAAAAGAAGCCGACACGAGCGTTCTAAAGAAAATCAACGCAGCGGCTAAAGAAGACAAAGAACCACAAAGTAAGATGTCGCCCAGAAAATTCGAGATTAACATCGAAGTGGAATCTTGTGATGATGAGGAATTTGCGGACATTGAAGACGAAAACCGTCTAACACCAATAGGAAAGGACACACTCATCCCGAAAAAAGTACGCACCGAACCTATAGAACTGACTCGTGAAAGCATACTCGATGCTGCCGAGAACATACTCCAGGAATCAACAGATGTAGCTGACAAAATACTTAACATCCACGTCAGAAATACTATAGGTTATGAGGATAAAATTACTCTGATACAAGACTGCCATGAGGGGCGAATACAACATGCTCTAGACGAATGGCATACGTGGCAGTTCCGAAGCTTTCACAGAGAGAACCCTCTGTTCTACAAATGCTACATTTGCACGAGGTCTTGGTGGCATTTAACGGATTTTCGTAACCATCTGTCTTCGCAACATCCAAATGATTTAGAGATTAAAATTATTGTAGAGAAATATGAAACCCATGAAGCCAATTTGATTGCTTATCACGACAAGCTCGTTGTTATCCTAGACATTTATACAGAAGGCCTTTGTTACCGATGCGGGAAAGATTATGCTGCTCATGAATTAGACTACAGGTTCGAGAAGAAGTTTTACATGAATAAAGGTTGCAATAAGCAGTTTTTCAGCTGTATGGGACTGAGGGATCATCTCGTTAGTTGTAAAGTCTGTAATAATCAGGATAAACCGTTGAAATGTAGTATATGTAAGTCAAGATTTGATACAGAAGAAGAGTTAAACTACCATTTAGTACTGTCTCATTCTGTTCGGTCTGACGTGCCAATAATGACTCAGTACAAAAACTGCAAGAATTGCTTAGAAAAATTTTCTTGTAAATATTTGCATAAATGCAAAGAAATTGGACCAAAGAGTGAGTGCCCCCACTGTTCGCAGAGTTTCCCAAATATTATGTCTTTAGAGATTCATATGGAACAGTCAAAGATAAGTAGCAAATGTGAAGTTTGTCAAAAGGTGATACGGTACAGGTGTAAAAGGTATGAACATATGCTGGCTCATACAGACAATTATATGATGCTAAGAAAGTGCATGGCCTGTAATGGTCTGAACGTGTTCCTCAATGATGAAGATGCAGCTGCACATTGGTTGTTGAAACATGCCTCCGGGTATAGTAAACGTAAAATCTATTTTCCTAAAATTGTGGTGCCGACGGCCTGCGTATATCAGGGTTTGGCAGAATTAAATTTGAAAGAACGTGGATCCATACCTGACGAAGAACGAGAATCCATACCTGAAGAAGAACGAGAATCTATACCTGAAGAAGAAGAATCCAAACCTAATGTAGAAGAATCCGTACTGAAACGAGAAGAATCCTTACTGCAAGAAGAATTAATTATAAAAAGTGAAATAGACTGTGAGGAAAAATTATTACAAGCAGACCTAGAATCAGATTTTTATACCGGAGCTGTTGTAGTCAAAGACGAGCCTGAAGACTTTGAAGATAGTCCAAGACTCGTCATCAAAGAAGAACCATTCGAAGCATTTGTAAGCCAAATGCGTGAAGAAGAGAATCTAATCGAAGATTTTAAACATGAAATAAGTGTGAAAGAAGAAGTCGTAGAGGAAGAACACGAAGAAGATGAAGAAGATATTATCAAACTGAATTTCAATGTAGCAGACTTATTTGTAAAACAAGAAGTAACTGTAGAACATAATAATGACACTCTACAACAGACAGAAGAGATTCAAGATTCAGAAAATAATGACACAGAAGAATTTTTAGATGCTAGAGAAGATTCTGTGCTGGAACCGGAAGTTATTATAGGAAGGGAATATAAGAGACACCAAAAATTATACAAATGTACTAAATGCGGATTCCGAGCAAAACATGGACTATATAAAAGTCATGTAGACTACGACTGCGGTGGACATCCGGGTAAAAAACAAAAATACGAGTGTACAAAATGTAAAAATACATTTGTGTCCATGAAAAAATATTTGACACATTTTAAAGAACATGGCTACCAGCATCTGTCTTGCCCTGAATGCTTGAAACAATTTGAGACATTCAGTCGGTTAGGGCAGCATGTTCATCAACATATTAAACATAGTTTTGTCCGAGTAAAAATGATCACATATGCAGGTAAAGCAATGACAAAACCTGATTATCAGTGCAAAAAGTGTGGAATAATCATAAGTTCACCTATGTTTTTTGAGCATTGGGAAACACATATAAATGGGCAGCCTACACATCCTATAAAGGTAACTTCGAGGCCTAAACATGAGCATGGAGAACTGCGTCAAACTATTATAAAGGAATGCATTGCACGCTTAACCACACAACCGAAAGAATGCAACCACTGCCACCGTTGGTTCAAACGAGTCAACGAATGCAAGAGGCACATGATAGAACATCTCCTGTCAGACGCATACAGCCAGAAACATGTCTACCACGAACTCAGATGCCAGGTCTGCGAACAAGGCTTTGAAACCGCAGAGAAATATAAACAGCATATGCGAAACCATGCCTCGTTACCGGTGTATAAATGTGAACTTTGTGACCGTACATTTAGTGACTCAAGTAACTTTACTAAACATAAAAAAGTACATAATTTAAAAGTGATTATCTGTGATCTGTGTAATAAAAAGTTTCAGTCGAAGACGTCTTTGGAGAAACATATGGTGAAACACAACAACGCAACACCAATTCCTTGCGAGATTTGCAACAAAGTTTTCTTCTTCGACACTGCCTACCGTCGCCATATAAGATACAACCACGAAAAATCCATCATCGGTGTCCGCTGTGTCATCTGCAGGAAAACGTTCGAGTCGTCAAAAGTTAAGTGGGAGCACATGTGGGAGGTACATAGGGAGAGGAGACAGAAAGCTGACTGCCCCATCTGCAATCAGTCCTTCAGAAAATACTCCGATGTTCGTGTCCATGCAAGGCATGTGCATGAGACGGAAGTGGCCGTGGTAAATGTGAAGAAAAATACAGTATATCCCAATTTAGGTGTTGGTACAAATTTAAATGATACTTCGATGATCAAAACCGGTAGGACGGAGACTTTAGTTGTCTTTGATTCAGATTGA
Protein Sequence: MAETSRKRSRKTKLVPRDYAEEEDDIELQIPETKISKSMKQPLNKLLTKKLVVIPLKRIFTKPKEADTSVLKKINAAAKEDKEPQSKMSPRKFEINIEVESCDDEEFADIEDENRLTPIGKDTLIPKKVRTEPIELTRESILDAAENILQESTDVADKILNIHVRNTIGYEDKITLIQDCHEGRIQHALDEWHTWQFRSFHRENPLFYKCYICTRSWWHLTDFRNHLSSQHPNDLEIKIIVEKYETHEANLIAYHDKLVVILDIYTEGLCYRCGKDYAAHELDYRFEKKFYMNKGCNKQFFSCMGLRDHLVSCKVCNNQDKPLKCSICKSRFDTEEELNYHLVLSHSVRSDVPIMTQYKNCKNCLEKFSCKYLHKCKEIGPKSECPHCSQSFPNIMSLEIHMEQSKISSKCEVCQKVIRYRCKRYEHMLAHTDNYMMLRKCMACNGLNVFLNDEDAAAHWLLKHASGYSKRKIYFPKIVVPTACVYQGLAELNLKERGSIPDEERESIPEEERESIPEEEESKPNVEESVLKREESLLQEELIIKSEIDCEEKLLQADLESDFYTGAVVVKDEPEDFEDSPRLVIKEEPFEAFVSQMREEENLIEDFKHEISVKEEVVEEEHEEDEEDIIKLNFNVADLFVKQEVTVEHNNDTLQQTEEIQDSENNDTEEFLDAREDSVLEPEVIIGREYKRHQKLYKCTKCGFRAKHGLYKSHVDYDCGGHPGKKQKYECTKCKNTFVSMKKYLTHFKEHGYQHLSCPECLKQFETFSRLGQHVHQHIKHSFVRVKMITYAGKAMTKPDYQCKKCGIIISSPMFFEHWETHINGQPTHPIKVTSRPKHEHGELRQTIIKECIARLTTQPKECNHCHRWFKRVNECKRHMIEHLLSDAYSQKHVYHELRCQVCEQGFETAEKYKQHMRNHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIICDLCNKKFQSKTSLEKHMVKHNNATPIPCEICNKVFFFDTAYRRHIRYNHEKSIIGVRCVICRKTFESSKVKWEHMWEVHRERRQKADCPICNQSFRKYSDVRVHARHVHETEVAVVNVKKNTVYPNLGVGTNLNDTSMIKTGRTETLVVFDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -