Basic Information

Insect: Aporophyla nigra
Gene Symbol: -
Assembly: GCA_947507805.1
Location: OX382303.1:4289634-4312475[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.7e-06 0.0004 21.3 1.4 1 23 219 242 219 242 0.97

2 9 0.069 5.8 8.2 6.3 1 23 249 271 249 271 0.98

3 9 0.00015 0.013 16.6 3.4 2 23 303 324 303 324 0.98

4 9 0.00019 0.016 16.3 1.8 1 23 328 351 328 351 0.96

5 9 0.058 4.9 8.4 0.7 2 20 368 386 367 388 0.93

6 9 0.18 15 6.9 7.3 2 23 450 472 449 472 0.93

7 9 3.2 2.7e+02 2.9 0.1 1 23 484 505 484 505 0.78

8 9 0.0019 0.16 13.1 3.2 1 23 511 533 511 533 0.98

9 9 1.9e-05 0.0016 19.4 3.5 1 23 539 562 539 562 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.7e-06	0.0004	21.3	1.4	1	23	219	242	219	242	0.97
2	9	0.069	5.8	8.2	6.3	1	23	249	271	249	271	0.98
3	9	0.00015	0.013	16.6	3.4	2	23	303	324	303	324	0.98
4	9	0.00019	0.016	16.3	1.8	1	23	328	351	328	351	0.96
5	9	0.058	4.9	8.4	0.7	2	20	368	386	367	388	0.93
6	9	0.18	15	6.9	7.3	2	23	450	472	449	472	0.93
7	9	3.2	2.7e+02	2.9	0.1	1	23	484	505	484	505	0.78
8	9	0.0019	0.16	13.1	3.2	1	23	511	533	511	533	0.98
9	9	1.9e-05	0.0016	19.4	3.5	1	23	539	562	539	562	0.98

Sequence Information

Coding Sequence: ATGAGCCAATCAGTGGTGTTCCTTAGCTCATCCGATGATTACTTACTTACAATTAATCAATCAACTCAGCCTAATATGCTTCCTCTGCTGGACATAGACCTCTTCCCTATCTACCCATCAGATAGCTTGATAACCTACGAAACAATATACAAAGTAGATCGCAACAATACAATGCTTATATCACCATTAACTGTAGTCAGCTTCACTGACCGAATCAAAACTTACATCACAAAAGACAGCATAGAATCAGACGATATGTTTGGCACAGAAAAGAAAGTTGAAAAAATAGAAAACATTGAACTAGATTACTTTAGCGATACATCCATGACGGGAGAAAATGATCCAATGTTAGATTTTGTTAAAGAAAAGATAATTTCAGACTTAGAAGTCACCTTTGAAGAAGAAAAGATAAAAGTTGACAACAGAAACGATATAGAGCCGTTAAGTCCTTCAGCGGTTTACGTAGGAGGTGAAGAAGGTATTATGAAGATTGAGTGTGAAGAAATAAATGAAACGAATAATGGTAGAAAGGACTCATGGATAAGAAGTAAGATTTTGGATAAGGTTCATTGGAAGAGGTTTACGCTGAGTGAGGAAGAAGCTGTGAACAATTTTCGGGCACGGGCTGAGGATAAGCGATATAAAGATGCCGCTTATAAGTGTACGGATTGTTTCAAGGGGTTCTCGAAAAAGGATATGCTGGCTAGACATATACAGTTGAGGCATGTTAAGATGCTGGGACCATACGAGTGTCGTTTCTGTCGTATGCGTTATAAACTCAACTGTTACCTACGCAAACATATCAGACAGCACTATTTCAAGTATGAGTGTTTGCGGTGTCATCTCATCTGCCCTTTAGAAAGTTCAGCTCTACTCCATGATGAGTACCACAGTGGAATTACAAGAAAGTGCGCTTACTGTAACGAAGAATTTAGGCATTCGTCAACATACTACACACACTTACGCACACACCGCAGCGAGCATGTGTGTACGTTGTGCGGCGCGTCGTTCGTCAGCAAGGCGGGACTGCACCAACACAAGAGGGTCAAACATGTTATTGTTGATATTGACAGTCCTGATGATGATGAGGAAGTGAATACGTACTGCCAACGATGCGACATCACTTTCGAAACGCGGAAAGCTTACGAAGAACATTTGTTTCATTCAGCTTTACATAGTGAAGGGAAAAGTGACTACAAACAGACAGTGAGCAGAAAAGTTTTAGGGAAAAAGCAACAAGCCAAAGTTACAAGGCGTTTAAGAAAACGCCACGACGAAGATATATTCAAGTTTACAAAAGATAGAAGAGTAAAGACGAAATATAGAAGAGAACATAGGAAACCTACAACGTGCCACCAGTGCGGAAAACACTTCGACACTCAAGCAGCATGTTGGAAGCATCACTTGTCGGAACACCCGCGCACTTCGTTCTACGCGCCCACCGAGCGATACATCTGTGAGATATGTGGGTCTTCACTAGCGCCGGGCAGCATCCGTACTCACAAGAACATGCATACCAGAGAAAAGCTACACACTTGCGACACCTGCGGAAAACAGTTCCACGCGACTGTGGGCCTGAAGCGACATCTACTGACACATACTGGAGAGAAGCCGTACTCATGTTCGTTATGTGACAAGCGGTTCACACAGAGCAACAGTATGAAGCTACACTACCGCACCTTCCATCTCAAAGAGCCGTATCCAAAGAGAAACCGCAGAAAAAACAAAGACGAGCCTAAAACAGCTGACGCCGACGGATCCAACACGGACTCTGATTCGGACAGCAGTTTGCCCGACATGGAGCAGGAGTTGCCCGAATTGGAGGCGGTCAAACCTGTGCCCGATATTATGGCTGACAAACCGAGCGATGAAAATATGCATTATTTGACTCTGACGTAG
Protein Sequence: MSQSVVFLSSSDDYLLTINQSTQPNMLPLLDIDLFPIYPSDSLITYETIYKVDRNNTMLISPLTVVSFTDRIKTYITKDSIESDDMFGTEKKVEKIENIELDYFSDTSMTGENDPMLDFVKEKIISDLEVTFEEEKIKVDNRNDIEPLSPSAVYVGGEEGIMKIECEEINETNNGRKDSWIRSKILDKVHWKRFTLSEEEAVNNFRARAEDKRYKDAAYKCTDCFKGFSKKDMLARHIQLRHVKMLGPYECRFCRMRYKLNCYLRKHIRQHYFKYECLRCHLICPLESSALLHDEYHSGITRKCAYCNEEFRHSSTYYTHLRTHRSEHVCTLCGASFVSKAGLHQHKRVKHVIVDIDSPDDDEEVNTYCQRCDITFETRKAYEEHLFHSALHSEGKSDYKQTVSRKVLGKKQQAKVTRRLRKRHDEDIFKFTKDRRVKTKYRREHRKPTTCHQCGKHFDTQAACWKHHLSEHPRTSFYAPTERYICEICGSSLAPGSIRTHKNMHTREKLHTCDTCGKQFHATVGLKRHLLTHTGEKPYSCSLCDKRFTQSNSMKLHYRTFHLKEPYPKRNRRKNKDEPKTADADGSNTDSDSDSSLPDMEQELPELEAVKPVPDIMADKPSDENMHYLTLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440496;
90% Identity: iTF_00906589;
80% Identity: -