Basic Information

Insect: Aporophyla nigra
Gene Symbol: BCL11B
Assembly: GCA_947507805.1
Location: OX382304.1:7873770-7883801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 3.3 2.8e+02 2.9 1.3 1 23 106 129 106 129 0.93

2 6 3.6e-05 0.003 18.5 3.3 1 23 398 420 398 420 0.97

3 6 3.4e-07 2.9e-05 24.9 0.7 1 23 426 448 426 448 0.99

4 6 8e-07 6.8e-05 23.7 3.2 2 23 666 687 665 687 0.97

5 6 1e-05 0.00089 20.2 3.3 1 23 693 715 693 715 0.99

6 6 6.8e-05 0.0057 17.7 0.4 1 22 723 744 723 744 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	3.3	2.8e+02	2.9	1.3	1	23	106	129	106	129	0.93
2	6	3.6e-05	0.003	18.5	3.3	1	23	398	420	398	420	0.97
3	6	3.4e-07	2.9e-05	24.9	0.7	1	23	426	448	426	448	0.99
4	6	8e-07	6.8e-05	23.7	3.2	2	23	666	687	665	687	0.97
5	6	1e-05	0.00089	20.2	3.3	1	23	693	715	693	715	0.99
6	6	6.8e-05	0.0057	17.7	0.4	1	22	723	744	723	744	0.97

Sequence Information

Coding Sequence: ATGGATATCAGTTATAGCACGTCAAAGATCCGAAGAATTTTCCAAGCCGACCGAAGGAAGCGTTTTTCTAGTGGTGTCCGCAAGAGGCGCTGGGGTGCGAACAACTGTTGTCGTCGCCGGAAGCAGCGCTGGCGGCTTCCGGCCGAGGAATGTTCTATATGGGCCTCCAACACCTACACAACATACCATAAAACTCACGATTCCTACCCAATAAAAATGACCGAAAAACTGCATACATACATAAATTACGGTACTCAACGGCCGCGACAACCGGATACGCTTTCCCGAGCTAAACGTCCACCCGAACCCAGCAACTATGTGTGCTCGACGTGCAAAGCGCGTGTTCACTCCGCGTGGAGGCTACTGCAACACGTGCAACATGTGCATGGCGTCAAGATTTATGTGGAGGCGATGCCGCAACAACAACCGAATAAGCAAAACCACTCGACGTCAAGTACTTCTTCGTCGAGCTCGGGCTGCTCATCCACTGGCGCGCCACTACCACCACCTAGCTTGCGCCATCACCCTTTACTGCCACCTCCAGATATGCACTCGCCGTTTGGAGTTGGTGGACTACTCAGGATGCCATTGCCAGGCAGCTTACCGCCATTGGCTCATCCTTCAGTTCCTCCAACGCCACTATTCGCGCGGCCAAACCACCACGATCATCGATTTAGGATGGAGCAGCTCGTTTCAGAGCAGTTCCGCCACCATGGTCTCAACTTGGCAGCTGCGGCTGCTGCTGTAGCGGCAAACTCAATGCCTCCACACCAAGCATTCCCATCACCGGCAGACCGGCCTCCGGTCGTACCAACGTCGGTATCGGGCCGAGACAGAGCCCCACCTGTATCTCAGCCCCTTTCACTTGAACCACAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCAATTCCAGCTCTCCTAGCCCCAGGAAGCATTCGCCTCCGTTCGCTTCCCCGTCGCCCTCCAGAGTCGGACAGACTCCTCCGGTGGGCGCCGGACCCGGAACGGTGGACGCGCCTCGCGACGCCAAGAGGCCGCACAGTTCGACTTCACCCGAACGTCGAATTGAACCACTCGCGCTGGCAGCCGATGCACCACCTACGGAGCGTCCGACAACAACGCCACCAGCCAAGCGCAACACAGATGAAGGAGTTCATTCCTGTGAATTTTGTGGAAAGAAATTCCGATTCGAAAACAACCTGATCGTACACCGGCGCTCACACACAGGTGAGAAACCTTTTAAATGTTCAGAATGTGATGAAGCTTTTGAGAAGGCATCCAAGCTAAAACGACACATGAAAGTGCATAGAGCGCCTGACGCTAATACGGAAGAGGGCGAGTCAGGTGGTGATACAGGTGAAGACGACTCTGATGACGAATTGGAGGATGAGGAGTTGGATGGGGAAGAAGAGGAGGATAATGAAGATGGAGATGACGTTGAGGAGGCGGAAGACTTAACTGTCTCAAATAGTAGTGCTCCGTCTGCGCCTACAAGGAAACAGACACCCATTATGCCCAACAATCCACCGAGTGCCTCAGTTGTTGGTGAACTGATGGACAAGTTTGGGTTATCTAACATTGCTCAATACAGTGAAGCTTTCAAACAAGCTTTGCAAGAATCAGGGAATTCTCTGAAGTGGCAACTAGCTAAGGATAGAGACAATAACAATGGCCCACCCAGTGACAAACCAAACGGTATGCCACCGACCGCTGCGCTACGTTTGAAAGAGGAATTTGCGAAAATGCCACCTCAGCCGCATCCTCTTTTCAACCCTTTTGAGAACCCTTTTGAAGCGTCCAAACGTATAAAATTGGACATGGATAGAGGTGAGGGTTGGTGGTTGCCGACCTTACACGCGCAAAGGCCACCCGATAACATATTCGACGGCCTCAAAAATAGTGGTAATGGTTTACTACAGAACCCTTTATTGAAATCGAAAGAGGGACGACGGAACGACACCTGCGAGTTCTGCGGGAAAGTCTTCAAGAACTGCTCAAACTTAACGGTACATCGACGGTCACACACCGGAGAGAAGCCGTACAAATGTGAACTCTGCTCATACGCGTGCGCACAGAGCTCCAAGCTCACGCGGCACATGAAGACGCACGGACGACTGGGCAAGGACGTTTACCGCTGCCGGTTTTGCGAGATGCCCTTCTCCGTGCCGTCAACGCTCGAAAAGCATATGCGGAAGTGTGTTGTGAATCAAAGTAATGGTGCTCCCTTAGCTCTATCCGATGACTCTAACGCGTGCCGTGATGAGGCGTCGTGA
Protein Sequence: MDISYSTSKIRRIFQADRRKRFSSGVRKRRWGANNCCRRRKQRWRLPAEECSIWASNTYTTYHKTHDSYPIKMTEKLHTYINYGTQRPRQPDTLSRAKRPPEPSNYVCSTCKARVHSAWRLLQHVQHVHGVKIYVEAMPQQQPNKQNHSTSSTSSSSSGCSSTGAPLPPPSLRHHPLLPPPDMHSPFGVGGLLRMPLPGSLPPLAHPSVPPTPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAVAANSMPPHQAFPSPADRPPVVPTSVSGRDRAPPVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGNSSSPSPRKHSPPFASPSPSRVGQTPPVGAGPGTVDAPRDAKRPHSSTSPERRIEPLALAADAPPTERPTTTPPAKRNTDEGVHSCEFCGKKFRFENNLIVHRRSHTGEKPFKCSECDEAFEKASKLKRHMKVHRAPDANTEEGESGGDTGEDDSDDELEDEELDGEEEEDNEDGDDVEEAEDLTVSNSSAPSAPTRKQTPIMPNNPPSASVVGELMDKFGLSNIAQYSEAFKQALQESGNSLKWQLAKDRDNNNGPPSDKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRIKLDMDRGEGWWLPTLHAQRPPDNIFDGLKNSGNGLLQNPLLKSKEGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00040232;
90% Identity: iTF_01093477;
80% Identity: -