Basic Information

Insect: Aporophyla nigra
Gene Symbol: -
Assembly: GCA_947507805.1
Location: OX382305.1:5564536-5575831[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.1 8.8 7.6 0.2 2 23 114 135 113 135 0.95

2 18 0.011 0.91 10.7 0.3 2 23 139 161 138 161 0.95

3 18 0.029 2.5 9.4 0.6 2 23 391 413 390 413 0.95

4 18 0.052 4.4 8.6 1.5 1 20 421 440 421 442 0.94

5 18 0.29 25 6.2 0.2 2 23 452 473 451 473 0.93

6 18 8.4 7.1e+02 1.6 1.5 1 23 489 512 489 512 0.84

7 18 0.012 1 10.6 3.1 1 23 521 544 521 544 0.94

8 18 9.5 8e+02 1.5 1.3 8 23 594 610 586 610 0.88

9 18 0.75 64 4.9 0.2 3 23 623 644 621 644 0.85

10 18 5.3e-05 0.0045 18.0 1.8 1 23 678 700 678 700 0.96

11 18 0.00032 0.027 15.5 1.0 1 23 707 729 707 729 0.98

12 18 8.8e-05 0.0075 17.3 2.3 1 23 734 756 734 756 0.96

13 18 0.00031 0.026 15.6 2.3 1 23 762 784 762 784 0.98

14 18 1.6e-06 0.00014 22.8 2.1 1 23 790 812 790 812 0.98

15 18 0.00032 0.027 15.5 2.5 2 23 819 840 819 840 0.98

16 18 0.00087 0.074 14.2 0.7 2 23 848 870 847 870 0.97

17 18 0.00041 0.035 15.2 0.6 1 23 875 897 875 897 0.97

18 18 0.0027 0.23 12.6 1.8 2 23 904 926 903 926 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.1	8.8	7.6	0.2	2	23	114	135	113	135	0.95
2	18	0.011	0.91	10.7	0.3	2	23	139	161	138	161	0.95
3	18	0.029	2.5	9.4	0.6	2	23	391	413	390	413	0.95
4	18	0.052	4.4	8.6	1.5	1	20	421	440	421	442	0.94
5	18	0.29	25	6.2	0.2	2	23	452	473	451	473	0.93
6	18	8.4	7.1e+02	1.6	1.5	1	23	489	512	489	512	0.84
7	18	0.012	1	10.6	3.1	1	23	521	544	521	544	0.94
8	18	9.5	8e+02	1.5	1.3	8	23	594	610	586	610	0.88
9	18	0.75	64	4.9	0.2	3	23	623	644	621	644	0.85
10	18	5.3e-05	0.0045	18.0	1.8	1	23	678	700	678	700	0.96
11	18	0.00032	0.027	15.5	1.0	1	23	707	729	707	729	0.98
12	18	8.8e-05	0.0075	17.3	2.3	1	23	734	756	734	756	0.96
13	18	0.00031	0.026	15.6	2.3	1	23	762	784	762	784	0.98
14	18	1.6e-06	0.00014	22.8	2.1	1	23	790	812	790	812	0.98
15	18	0.00032	0.027	15.5	2.5	2	23	819	840	819	840	0.98
16	18	0.00087	0.074	14.2	0.7	2	23	848	870	847	870	0.97
17	18	0.00041	0.035	15.2	0.6	1	23	875	897	875	897	0.97
18	18	0.0027	0.23	12.6	1.8	2	23	904	926	903	926	0.96

Sequence Information

Coding Sequence: ATGTCTTCGGATGAGTCTGATGATGAACCGCTATCCGTCATAGCGGCAAATAAGAAACTAGACCCAGAACACTATGTGGAAGAGATAACATCAGATTCTTGGGAGTATCCAACTAAGAAGAAAAAGAAGTTACCACCGCCTAAACGAATGTCGGTCACGATAAAGCTTCAACGTAACAAAGCTAGTCAGCTTCCGCCGGTGATTGAGCGGCCGACGGACGTGTGGCTCTACTTAAAAGATCTAAATCCTTCGGGTCCATACAGCTGTTTACTTTGCCCAGACTGGTTTATAAACAGATCGAAAATCATTGTTCATTACGTCCTAAATCATAAGAAAGATTACTGTGGCATTTGTAAATACTTTGTACCTGATAGAGAGAGTTGGTGGAAACATCTGAAGTTTCACACCCCCTGGCCATGTTCACAATGTGTTGAGAACTTTGATACTGAAATAGAGCTTCGACATCATCTCAAGTCTGTTCACAGTCTAGTACATTGCAGACTCTGTCACTTCCGTTTACATGACGGTGATCTGTACCACTCACATTTATTCCAAAAACACAATGTTTCCAATGTGTCAAATAAGGATGAAGAAAACCTTTGGGAGTTAGAATATGATGGCACTTCAAACTTTATCTGTTTGCTATGTAATAAAGCTAACAACTCAACTAGAACATTCTTCAGCCATTATATGGGGTATCATCATTTTACCTTAAAATGTTTCACTGCTCTGATGTCTGGAAAAGATGTCCAATTCTCAGTGTATGGTGCAGATCTCAGAGCTGAATTTGTTGAAGAACAACTGAAACACCATGAAAGATTTGGCTATGTTGATTCTGAGCTCAAACCTATAGAAGCTATAGAAGCTGACCCAAACGAAACTAGAGAATTACTCAAAGTCCTCATACCAGAAATTAAACAAGAAGTACAGACGCCTGAAGAAGCCAAGAATGATGATGGAGTTGTCAAGGCAAATGACGATGATAGTGATATTCACAAAAACTACAACGGCATTGATGATTTTGATGTCACTTTAATGGAACTGATAGTTGTACAGAAATGCTACCATGATTACATTAGTGACATATTGTCAGATATTAAATGTAATTCAGTTTTTGAATATTCTGATGTTGATTATGAGAAGCTTACAACTGAAGTCACAATGGATATAGTTTGCACTCTGTGTAGTGTCCGGTACGGCAATTTGTCAAGTTTTACCACTCATATGTTCAAAATGCACAGTATAAAGTCCTTGCCAATATTTTCATGTAGAGTGTGTGCTACTACTTTCGAGACTCACCATGAGCTTGAGACCCATACCTCAAATGAGTTGGGGGAGTTTGAGGATCTGTGGATATGTCAGTTTTGTGATGAGGAGTTTGACGACAGGGAGGTGACTAGGCGCCATCTGACAGAACATTGGGAACAAGTAGAATATGACAACTGTTTCAGTCCACATTTAGGTTTCAAATGCAGGTATTGTCCCACACTGTTTTGGCATGAAACGGACAGGGAGACGCATCAAGTGCGGGCACACTTCTTTAGTCATAAATCCTCTTATTACAAGTGTGAGAGCTGCAATGAAATGTTTAGTGATAAGGTCTGGTACGTCCACCATCATTTAGAGAAGCACAGCACTCCAGATAAGACACCTCTCTACCTCCTGAAATGTTCCATCTGTTGTGTGGTGTTGCCAAGTATTGAAGAGATGAGAGCACACTTCAACTGCGACCATGCCGAAGCTAGGAAGGTGTTCTGTTCGCTGGATTCTTGTCAGTACAAGCCTTTGAGCCATAGGAAATCTTTTAAGCTACATGTGCGGACGATGCACTCAGGTCGTTCGTCTCGTCCGGATCGTGCTATAGATTGCGCAGTGTGCGGCCGCGAGTTCCCCAGCTCGCGGGCATGCGGCGCGCACATGGCGCAGTCGCATGGACCTGGCAAATTCAAGTGCAAGCTCTGCAGGGAGATACTGCATACTATGGATGAGAGAAAACTCCACTACCTCATAAGTCATCCTGGTCAGCATCCGTTTGAGTGCTCGGAGTGCGGCAAGTCGTTTCAGTACAAGTCCTCACTGTATATGCACAAACAGGACCATCTGCCTAACAAGCAAAACTATACTTGTACTGTTTGTGGGAAGACTTTTCTGAAACGTGATTCGTTCCGCGAACACGTACAAATCCACGAGGGTCCACGTCATGCGTGCTCTTACTGCCCAATGCGCTTCGTGCAACGCTCCAACATGCTACGACACGAGCGCCGTCACACTGGCGAACGGCCGTATGCCTGTCCGCACTGCCCTAGGACCTTCGCTGACAAAGGAGCCTGTAACTCACACACCAGGACCCATGTGAAGGAAACATCGTACGCCTGTGTATACTGCGGGAAAACGTTTGTGCAGAAGTCCAAGCTAACATATCACACCAGAAAACATACTGGGGAGAACTTGGAAACATGCACGGTGTGCTCAAAGTTGTTTACAAGTCCCTGTTCGCTGCGAGAACACATGAAGATACACGAACCTAAGAAAGATCAAGTAAAGTGCCCGCTGTGTGACCGCAAGTATCAAGACGAGCGCTACATGTTACGTCACCTACGGACCTCCCACACGCACGCGAGTCACCCCTGCCCTATCTGCAACAAGACAATGACCAGCGCCGCAGGGCTCCGGCACCACGTCATCACTCATTCTACCTTGAAGACCATCAGGTGCAAAATGTGTCCAAAAGCCTACTCTGTAAAAAGATCAATGCTCAAACATTTCCGTCGTCGACATGGCTTCAAAGGTACCGAACCGAACATCAAAGACTACTACACTAGATTGGACCCTAGAGAGTGTAACTTAGGTCTTGACGAGCCGACAATGACCAGCATATTCGGACCTCCTACAAAGAAACCGATGGATGAACTCCTTATAGCAGATTACGTAACACTTACTAATATGGAGCCACCGAATCCGATAGAAGAAGAAGAAAAAGGAGAGAGTCAGACTACAGATACACAAGACTCACAATTTGAGTCTCACAAGTCTCAGTCGGATGATGAACAGTTTAGAGAGAGTGACAAGGACACAGATAATTGTGAAACAGAGGGAAGAACAGTTGTTATCAAGATTGAAGCTCCAGAACCGCCTGAACAGAATTCTGCAGAGCTGGAACCGACTGACTTTGTTAGCGTTAAAATTGAACCAATGGATGAACATGCTGGGGATGAATAG
Protein Sequence: MSSDESDDEPLSVIAANKKLDPEHYVEEITSDSWEYPTKKKKKLPPPKRMSVTIKLQRNKASQLPPVIERPTDVWLYLKDLNPSGPYSCLLCPDWFINRSKIIVHYVLNHKKDYCGICKYFVPDRESWWKHLKFHTPWPCSQCVENFDTEIELRHHLKSVHSLVHCRLCHFRLHDGDLYHSHLFQKHNVSNVSNKDEENLWELEYDGTSNFICLLCNKANNSTRTFFSHYMGYHHFTLKCFTALMSGKDVQFSVYGADLRAEFVEEQLKHHERFGYVDSELKPIEAIEADPNETRELLKVLIPEIKQEVQTPEEAKNDDGVVKANDDDSDIHKNYNGIDDFDVTLMELIVVQKCYHDYISDILSDIKCNSVFEYSDVDYEKLTTEVTMDIVCTLCSVRYGNLSSFTTHMFKMHSIKSLPIFSCRVCATTFETHHELETHTSNELGEFEDLWICQFCDEEFDDREVTRRHLTEHWEQVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHFFSHKSSYYKCESCNEMFSDKVWYVHHHLEKHSTPDKTPLYLLKCSICCVVLPSIEEMRAHFNCDHAEARKVFCSLDSCQYKPLSHRKSFKLHVRTMHSGRSSRPDRAIDCAVCGREFPSSRACGAHMAQSHGPGKFKCKLCREILHTMDERKLHYLISHPGQHPFECSECGKSFQYKSSLYMHKQDHLPNKQNYTCTVCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHTRTHVKETSYACVYCGKTFVQKSKLTYHTRKHTGENLETCTVCSKLFTSPCSLREHMKIHEPKKDQVKCPLCDRKYQDERYMLRHLRTSHTHASHPCPICNKTMTSAAGLRHHVITHSTLKTIRCKMCPKAYSVKRSMLKHFRRRHGFKGTEPNIKDYYTRLDPRECNLGLDEPTMTSIFGPPTKKPMDELLIADYVTLTNMEPPNPIEEEEKGESQTTDTQDSQFESHKSQSDDEQFRESDKDTDNCETEGRTVVIKIEAPEPPEQNSAELEPTDFVSVKIEPMDEHAGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: iTF_00758517;
80% Identity: -