Basic Information

Insect: Aporophyla nigra
Gene Symbol: -
Assembly: GCA_947507805.1
Location: OX382318.1:2931431-2944418[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.53 45 5.4 2.9 1 23 400 422 400 422 0.95

2 9 2.2e-06 0.00019 22.3 0.9 1 23 469 492 469 492 0.97

3 9 0.00011 0.0097 16.9 0.2 2 23 498 519 498 519 0.97

4 9 5.4e-05 0.0046 18.0 3.9 1 23 527 549 527 549 0.97

5 9 3.2e-06 0.00027 21.8 1.4 1 23 554 576 554 576 0.96

6 9 9.2e-05 0.0078 17.2 1.4 1 23 585 607 585 607 0.99

7 9 8.3e-07 7e-05 23.7 1.2 1 23 613 636 613 636 0.98

8 9 0.068 5.8 8.2 0.8 1 14 642 655 642 665 0.80

9 9 4.5 3.8e+02 2.5 4.3 1 23 673 696 673 696 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.53	45	5.4	2.9	1	23	400	422	400	422	0.95
2	9	2.2e-06	0.00019	22.3	0.9	1	23	469	492	469	492	0.97
3	9	0.00011	0.0097	16.9	0.2	2	23	498	519	498	519	0.97
4	9	5.4e-05	0.0046	18.0	3.9	1	23	527	549	527	549	0.97
5	9	3.2e-06	0.00027	21.8	1.4	1	23	554	576	554	576	0.96
6	9	9.2e-05	0.0078	17.2	1.4	1	23	585	607	585	607	0.99
7	9	8.3e-07	7e-05	23.7	1.2	1	23	613	636	613	636	0.98
8	9	0.068	5.8	8.2	0.8	1	14	642	655	642	665	0.80
9	9	4.5	3.8e+02	2.5	4.3	1	23	673	696	673	696	0.94

Sequence Information

Coding Sequence: ATGTTGCACAACACGGGGCATTATGGTCCGAACGATGCCCCAATTAACATGGGAACGCCCGTAAATATGACACCGATGAGTGGTCATATAAATATCACTCATAACATTAATAATTTGAGCAAAATAGCTCATCAAAGTGTCCCATCGCCTAGCGGACACTATAATCTACCGGACTATGCACACTACAACCACTCTCCAATAGGTATACCTTCACAAATGGGTCAGTTTCCTAGCTATCAACAACTAGGATTCCAGCAATCATACCTGAATCAAAGTGCGAATAACATGAGCGATTTACCATTCCCAAACGGTATGTTTCCTATGAATTTAAATATACAGAACGAGCATAACGCTAATATGATGAATTATGCTTACGATAAGAGAGTAATTGAGTCAGTGAGGCAGGAAAACTTTAAAGAACAGAACATGCGAAAAATGCCTTTGAATATACCTCAAATACCAAATAAACTATACAACAAGCAAATTGGCGGGAATGACGACTTCATACATAACAACATGTATGAAGAAACTCAACATAATCTAGATTTAAGCATGAAAACGCAAGAAAAATTACAAATCAACAGCACTAGACGGAAAAACATTGAAAACACCGTCAAATTAATTGAAGATATTCTAACTCACTCATCAAATAAGCCTAAAGAGGTACCAGAATTTATTCCCATACTACCAAACACCACAAAAGCTGATGTACCAGTAGTTAAGACAGTTGAAAATGTAACGAAAATGTCAGCAAATATCCCAGACTCGAATTCAGACCCTCTAGCAGAATCTCCACCAGACTTAACAGTTGATAAATCAAATAATGACAATGCTCATCCAAATCCAATAGACAGTCATCCAGATCCAGTAGACACTGATCAACCAAATCTTACAGAAAAAGAAAGTAGAGACAAACGAAGATCAGAAAATGACATGACATCAGATGATGAGGAGTTAAAACCTATAGGAATAACGCAACACTTCATAAGAGAAGAAGCAGATGTGACGACAGACAATACTATTGTTATAAAGGTTGAGAAAGCAAGTTGGGCAGACTCGGAATGCTACACGCCATTCTTGAAAGACTGTCATGGGTTTGAGAGGGATGAACATATGAATTATAGAATTATTGAAGGTGACTGTAGTGTTTGTGAAGCTGTATCTTCTTATAAAAATGATGTAAAACCAGAAGGAGTATTTGAATGCCCGCATTGTGCACTCCTCTTCAAACATCCAAAGAGATTTCTCATTCACAATAAATGGCATACATTTGGCCTAACGAATATTAAACGAATGGAGATTGCCAAAGTAAGAGAACAAATGAGGTTTGAAAGAAAAGAGGCAAAGATTATAGAGCGAATGAACTCTAAAGAGGTTACGGATGTTAAGGATGACGAAAAGGTGTTTCCGTGCAAGGACTGTGATAAAGTGTTCAGTGCTAAAGGGAGCTTGAAGAATCATAGGCAGAGAACACACCCAACCCGCGTACGAGAATGCAGAATCTGTCACAAAGTAATCTCAAACTGGAACGCTCTTCGGGCGCACATAGCAACCCACTCAGCGGACTCAGGGCTCGGCTACCAGTGCAGCCAATGTCCTAAGAGGTTTAAGTACTCACACTCGCTGGCTAAACATTCTGATACTCATTTGGAAAAAGTGCACGCCTGCACGGATTGCCCCAAGAAGTTCGGTTCGCAAGCTCTTCTAAAGATGCATATGAAGACACATGAGCGAGTTTTGCGTGGCGCCACTTACCGATGTACTTACTGTGCGAAAGGATTCTTTGAATCCTATAGTTTACAGGTACACGAAAGAACACATCGTAACGAGAGACCTTATACGTGTGACATCTGTAAGACCAGCTTCGGAACTAACTCTAGTCTTAAAAGACATTTGAAAGTGTCCCACAACACAGCGAAGCCCTATCAGTGTAGTACTTGCAAGCGGAACTTCTCAACGGAATCCATCAGGGACAGGCACGAGCTGAGGCTCCACGGGAAACCCGAGGACTTCAAGTTTCCATGCAAACAGTGTTCTTGCAAGTATTTAAAACTAAAAGATCTCCAAAAACACGTCTACAAAATGCATCCCAAAGGCAAAAGGAAGAAAAGGGTGCAAGTAAGCGAAGGAAGCGATTCGGAATAA
Protein Sequence: MLHNTGHYGPNDAPINMGTPVNMTPMSGHINITHNINNLSKIAHQSVPSPSGHYNLPDYAHYNHSPIGIPSQMGQFPSYQQLGFQQSYLNQSANNMSDLPFPNGMFPMNLNIQNEHNANMMNYAYDKRVIESVRQENFKEQNMRKMPLNIPQIPNKLYNKQIGGNDDFIHNNMYEETQHNLDLSMKTQEKLQINSTRRKNIENTVKLIEDILTHSSNKPKEVPEFIPILPNTTKADVPVVKTVENVTKMSANIPDSNSDPLAESPPDLTVDKSNNDNAHPNPIDSHPDPVDTDQPNLTEKESRDKRRSENDMTSDDEELKPIGITQHFIREEADVTTDNTIVIKVEKASWADSECYTPFLKDCHGFERDEHMNYRIIEGDCSVCEAVSSYKNDVKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEIAKVREQMRFERKEAKIIERMNSKEVTDVKDDEKVFPCKDCDKVFSAKGSLKNHRQRTHPTRVRECRICHKVISNWNALRAHIATHSADSGLGYQCSQCPKRFKYSHSLAKHSDTHLEKVHACTDCPKKFGSQALLKMHMKTHERVLRGATYRCTYCAKGFFESYSLQVHERTHRNERPYTCDICKTSFGTNSSLKRHLKVSHNTAKPYQCSTCKRNFSTESIRDRHELRLHGKPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKRVQVSEGSDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00071769;
90% Identity: -
80% Identity: -