Anig024690.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382319.1:12043419-12064030[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.51 43 5.5 0.9 1 23 95 118 95 118 0.95 2 12 0.17 15 6.9 0.5 1 23 126 148 126 148 0.94 3 12 0.19 16 6.8 1.5 1 23 152 174 152 174 0.96 4 12 0.00069 0.058 14.5 1.1 1 20 181 200 181 202 0.94 5 12 0.0093 0.79 10.9 1.0 2 21 209 228 209 229 0.92 6 12 9e-05 0.0076 17.3 0.2 2 23 245 266 244 266 0.94 7 12 0.00018 0.016 16.3 0.1 1 23 271 293 271 293 0.98 8 12 0.0014 0.12 13.5 4.1 1 21 302 322 302 327 0.93 9 12 1.7e-05 0.0014 19.5 2.3 1 23 335 358 335 358 0.93 10 12 0.0035 0.29 12.3 0.4 1 23 364 387 364 387 0.95 11 12 0.012 1 10.6 0.3 3 19 400 416 398 417 0.89 12 12 0.0036 0.31 12.2 1.3 1 23 430 453 430 453 0.98
Sequence Information
- Coding Sequence
- ATGCTCCAGACCGTATATCGGCAATCTCAACAGAGACTAGCCATTGGCGCGGGAGATATTATAGTGCACAAGGCGTACAGGCGCGATGTTATATCTCCCTTTATTTCACAGGTGGACCCCCCAAAGCGCCAGAAGATAAAGAAGGAGAAAAACACCGACAAGAAGAGTAGGAAGCTAAAGAATCTGCCAGAAGAGTTGGTAGAACTGTACACTATGAGTAAAGAAGAGATGTGGACTATAAGGATAGAGGATTTGAACAGCAAGGAGTTTCAGAAGCTTAAGTATAGGTGTGACAATTGTATTATTGCCTTCAATACTGAGAAGCTGATGCATGATCATCTAAATGGAAAACACCAACCTAAAAGCGGAGACTGCCATCAGTGCTCAATCTGCCAGGCGTATTTCCTAACTAAAGACAACGTGGCTGCCCACAAAGCGTTACACCAACAGGGCTATAAATGTCGGGAGTGTGGGTTCAATACTACGCTGAAGAGACGCATGTTGAAACATGTTGGGACTCACGCGCCGAGTGGGGATGCTCATGTGTGCCAGACTTGTGGGAGTAGGTTTAGCACAAAATCGAAGCTAACCTACCACCGCGGCGTCTGTTGTCAAGAACGGCCACAGTGCGACTGTTGCGGAAAAATATTTGCGAACAAAATGACACTCAAGTACCACCTCAAAATCCTGCCACAAAATAAGGACGACAAGCCTAAAGAGAAGCTGTTCATACCGTGCAAGGGATGTGATAAAGTGTTTCAGTCTAAGAAGAGTTACAGAGCGCACGTTGTGATTCACAACGGGCTGACGTACCCGTGTCCGATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGACACGCGCGCAACCACCGCGAGCGACAGGCCGGCAACCTGCACGAGTGTCGCGCCTGCGGGAAGACCTTCGCCAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTCAGCCAGGATACCTTCCCACACGAATGTAACTACTGCGGAAAGAAGTTCGCGACAAAATGGTGTCTGACCGACCACATCGACTGGGACCACTTGAAGAAAATCAAATACCAGTGTTCCTTCTGTTTTAAGGCCTTCAAGACAGCTAAGATATTGGTGGCCCACGTCAATAATATTCATGAGGGTAAGAAGAAAGAAGCGGAGGGCGAACATCTGTGTGAAATATGCGGAAAATCATATAGGACAGTGAAACGCCTAAAGGGCCACGTGTGGGCGATGCACACGAAACGGTCCAACAGTAAGATATACAAATGCAAGCTATGTCCGGCCACCTTCAAGTGGCAGACCAGCATATACAAGCACATGAAGATGATGCACGAGAATATTAAGAAGACTAAGCAACCATTGCGCAGCGTCCAACCTTTAAAGAAAGAGGAGCCCTACACAGACATCGAGATAGCGAACCGCATGCAGTACTTCCAACAGAACATTGGCGGGACCTTGAACATAGTCCACATACAACCCTTGGGAATCGCTGAAAATATTGTTTAG
- Protein Sequence
- MLQTVYRQSQQRLAIGAGDIIVHKAYRRDVISPFISQVDPPKRQKIKKEKNTDKKSRKLKNLPEELVELYTMSKEEMWTIRIEDLNSKEFQKLKYRCDNCIIAFNTEKLMHDHLNGKHQPKSGDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGTHAPSGDAHVCQTCGSRFSTKSKLTYHRGVCCQERPQCDCCGKIFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFQSKKSYRAHVVIHNGLTYPCPICGKLFQWKRNLARHARNHRERQAGNLHECRACGKTFASRDCYNNHMRLSKKHVSQDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSNSKIYKCKLCPATFKWQTSIYKHMKMMHENIKKTKQPLRSVQPLKKEEPYTDIEIANRMQYFQQNIGGTLNIVHIQPLGIAENIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726786;
- 90% Identity
- iTF_01027700;
- 80% Identity
- -