Anig010310.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382317.1:16090894-16092506[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.007 0.59 11.3 0.3 1 22 153 174 153 176 0.89 2 10 1.7 1.4e+02 3.8 0.0 2 19 180 197 179 200 0.90 3 10 0.033 2.8 9.2 4.6 1 23 204 227 204 227 0.96 4 10 7.6e-06 0.00064 20.6 0.6 1 23 230 252 230 252 0.98 5 10 0.00015 0.013 16.5 0.4 2 21 257 276 256 277 0.93 6 10 1.6e-05 0.0014 19.6 0.9 1 23 296 319 296 319 0.95 7 10 9.7e-06 0.00082 20.3 2.9 1 23 325 347 325 347 0.97 8 10 0.00032 0.027 15.5 1.2 1 23 353 375 353 375 0.99 9 10 0.0016 0.14 13.3 0.6 1 23 381 404 381 404 0.95 10 10 0.0003 0.026 15.6 3.3 2 23 410 431 409 432 0.94
Sequence Information
- Coding Sequence
- ATGATTGAGGAGTCAGAATTAAATGTGCTTGTATCAAACGTACTGAGCGAAAATCGGTACAGCCATTGCAGGTTATGCCTAAAGGATATACAGGAACATTACGTTCGTTTTCATGATTCAGTGTCTTTGGATTCCTCGAGTGGGGTTTATCAAGCGCTTTCTGAAATACTAACGAAACTTTTGGGGGCTGAAATCTGTGAAGAGATAGCTGGGATTGATGCAGTGTGTATGCCATGTGTAGACAAAGCACTTGAATCACTAAAGTTCCTACAATCGTGTGAAAATTCAACTAATGTACTAAATAATGTGTTTAATAATCTTTCTAAGACACTGACTGTTGATGTTGACACTACAAGCACAGATCATACTTTGTACATATCAGTTAGTGAGCATGAGTCCCAACTTATGTTGGTAAAGAATGAAGCTAAGAAGGAGATGCCCCAAGCAACTAATATTTTCCAGTGTACTAAATGCAATGAACAATTTGACGACATAATAGAGCTTAGAGTACATAACGTATCAACTCATGCTATACTCACATGTGAGAAATGCTACGATAATGTAAGTGATGAGAGTGAGTTGACTGCCCATGAAGACAGTCAGCTTAAGTTTATGTGTCCCAAATGCAATCAATTTAGATGCACGGAGGTAAGCTTGAAACACCATCAGGATAAAGCCCATGGAGTGTTTGTATGTAAGGACTGTGGCAAATCTTTCCAAAGTATAGATAAACTGCAGATTCATGAACAAAAACATGTCTCCAAAAGTGAATGTCCAAAGTGTGGCAAAAGTTACAACACTAAAGGATTCTTCTTGAAACATGTAAAATTATGTCTAGAAGACATGTTGGACCCACATCCAATAAGAAGTAAAATTGAGAAGACATATTTTTGTGACAAGTGTGGAAAAGGCTATAGTACTCCTGGAGGTTTACGGGTCCACCATAGATTTGTTCATGGCAATGCTAAGCCACATACATGTAAATATTGTAATAAGCAGTTCACTGCTCCAAGTTACTTGAAAGTGCACATGGTGAAGCATACTGGAGAAAAGAACTTCAAGTGCGATCTGTGTAGTCGACTGTTTGTGTCTAAAGAGGCATTGTTGTACCATACTAGGAGACACACAGGGGACAAGCCATACAGTTGCACTTTCTGTGATGAGAAGTTTGTGAATGCCTCGGCTAGGGCTGAGCATATAAAGTTCAAACATGTTGGTCCAACCCTTATGTGTGAGATATGCTCTCGCAAATTCTTTACCCCTAATTTCTTAAAGCAGCATATAAAGAAACATCATGATCCGTCTAACAAGCTGTATGCTGGCAGAAGTCTTATACCACCTAATGTTCCAGCTATTGAGAATATGAGAGTTAGGTTTATTGACTGA
- Protein Sequence
- MIEESELNVLVSNVLSENRYSHCRLCLKDIQEHYVRFHDSVSLDSSSGVYQALSEILTKLLGAEICEEIAGIDAVCMPCVDKALESLKFLQSCENSTNVLNNVFNNLSKTLTVDVDTTSTDHTLYISVSEHESQLMLVKNEAKKEMPQATNIFQCTKCNEQFDDIIELRVHNVSTHAILTCEKCYDNVSDESELTAHEDSQLKFMCPKCNQFRCTEVSLKHHQDKAHGVFVCKDCGKSFQSIDKLQIHEQKHVSKSECPKCGKSYNTKGFFLKHVKLCLEDMLDPHPIRSKIEKTYFCDKCGKGYSTPGGLRVHHRFVHGNAKPHTCKYCNKQFTAPSYLKVHMVKHTGEKNFKCDLCSRLFVSKEALLYHTRRHTGDKPYSCTFCDEKFVNASARAEHIKFKHVGPTLMCEICSRKFFTPNFLKQHIKKHHDPSNKLYAGRSLIPPNVPAIENMRVRFID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425368;
- 90% Identity
- iTF_00906426;
- 80% Identity
- -