Basic Information

Insect: Aporophyla nigra
Gene Symbol: -
Assembly: GCA_947507805.1
Location: OX382294.1:23052711-23074747[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.00049 0.042 14.9 3.5 1 23 202 224 202 224 0.98

2 28 0.00039 0.033 15.3 0.6 2 21 253 272 252 273 0.92

3 28 0.00022 0.018 16.1 0.1 2 23 304 326 303 326 0.96

4 28 7.6 6.4e+02 1.8 0.2 2 12 346 356 345 359 0.86

5 28 0.00023 0.019 16.0 0.9 1 23 376 399 376 399 0.97

6 28 0.16 13 7.1 1.9 1 23 418 440 416 440 0.91

7 28 0.0046 0.39 11.9 2.9 1 23 480 503 480 503 0.94

8 28 0.0017 0.14 13.3 4.1 2 23 544 566 544 566 0.97

9 28 0.0021 0.18 12.9 0.6 1 23 616 639 616 639 0.97

10 28 0.0015 0.12 13.5 0.2 1 23 692 714 692 714 0.97

11 28 0.047 4 8.7 7.9 1 23 725 747 725 747 0.97

12 28 0.051 4.4 8.6 0.6 2 23 759 780 758 780 0.95

13 28 0.0038 0.32 12.1 0.5 1 23 790 812 790 812 0.98

14 28 4.4 3.7e+02 2.5 7.3 1 23 841 863 841 863 0.93

15 28 0.0031 0.26 12.4 2.8 1 23 874 896 874 896 0.97

16 28 5.2e-05 0.0044 18.0 0.2 1 23 904 926 904 926 0.98

17 28 0.00063 0.053 14.6 0.2 2 23 946 968 945 968 0.97

18 28 1 85 4.5 0.3 1 23 986 1008 986 1008 0.90

19 28 0.042 3.6 8.9 4.0 1 23 1015 1037 1015 1037 0.97

20 28 0.0036 0.3 12.2 3.1 2 23 1048 1070 1047 1070 0.95

21 28 0.014 1.2 10.4 0.2 2 23 1093 1114 1092 1114 0.95

22 28 1.3 1.1e+02 4.2 3.6 2 23 1157 1179 1156 1179 0.95

23 28 0.0052 0.44 11.7 0.1 2 23 1195 1216 1194 1216 0.95

24 28 0.014 1.2 10.4 0.8 2 23 1255 1277 1254 1277 0.95

25 28 0.19 16 6.8 3.3 2 23 1294 1312 1294 1312 0.90

26 28 0.78 66 4.9 1.9 2 21 1316 1335 1315 1336 0.93

27 28 0.45 38 5.6 1.0 2 23 1385 1406 1384 1406 0.93

28 28 0.0031 0.26 12.4 0.5 2 23 1417 1439 1416 1439 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.00049	0.042	14.9	3.5	1	23	202	224	202	224	0.98
2	28	0.00039	0.033	15.3	0.6	2	21	253	272	252	273	0.92
3	28	0.00022	0.018	16.1	0.1	2	23	304	326	303	326	0.96
4	28	7.6	6.4e+02	1.8	0.2	2	12	346	356	345	359	0.86
5	28	0.00023	0.019	16.0	0.9	1	23	376	399	376	399	0.97
6	28	0.16	13	7.1	1.9	1	23	418	440	416	440	0.91
7	28	0.0046	0.39	11.9	2.9	1	23	480	503	480	503	0.94
8	28	0.0017	0.14	13.3	4.1	2	23	544	566	544	566	0.97
9	28	0.0021	0.18	12.9	0.6	1	23	616	639	616	639	0.97
10	28	0.0015	0.12	13.5	0.2	1	23	692	714	692	714	0.97
11	28	0.047	4	8.7	7.9	1	23	725	747	725	747	0.97
12	28	0.051	4.4	8.6	0.6	2	23	759	780	758	780	0.95
13	28	0.0038	0.32	12.1	0.5	1	23	790	812	790	812	0.98
14	28	4.4	3.7e+02	2.5	7.3	1	23	841	863	841	863	0.93
15	28	0.0031	0.26	12.4	2.8	1	23	874	896	874	896	0.97
16	28	5.2e-05	0.0044	18.0	0.2	1	23	904	926	904	926	0.98
17	28	0.00063	0.053	14.6	0.2	2	23	946	968	945	968	0.97
18	28	1	85	4.5	0.3	1	23	986	1008	986	1008	0.90
19	28	0.042	3.6	8.9	4.0	1	23	1015	1037	1015	1037	0.97
20	28	0.0036	0.3	12.2	3.1	2	23	1048	1070	1047	1070	0.95
21	28	0.014	1.2	10.4	0.2	2	23	1093	1114	1092	1114	0.95
22	28	1.3	1.1e+02	4.2	3.6	2	23	1157	1179	1156	1179	0.95
23	28	0.0052	0.44	11.7	0.1	2	23	1195	1216	1194	1216	0.95
24	28	0.014	1.2	10.4	0.8	2	23	1255	1277	1254	1277	0.95
25	28	0.19	16	6.8	3.3	2	23	1294	1312	1294	1312	0.90
26	28	0.78	66	4.9	1.9	2	21	1316	1335	1315	1336	0.93
27	28	0.45	38	5.6	1.0	2	23	1385	1406	1384	1406	0.93
28	28	0.0031	0.26	12.4	0.5	2	23	1417	1439	1416	1439	0.95

Sequence Information

Coding Sequence: ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTTGGAGACTTTTACTCGATCTTCACCGTCGACAATGCTTTGCAGCTGGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGACGGCGATGGGCTGCCTGACAAGGTGTGCTCGGAGTGCATACAGAAGCTCAGCAGTGCGCACATCTTCAAACAGCAGTGTGAGCGAGCTGACCAGGAGCTACGCCGCAACTATGTGCCTCCGCCCGGATTCAGCATCAGTCCGCCGCCTCCCAACAGGCAGAGCAGCGATTCCGCCTTTTCAAATCATACAGACACCTCCAACTTGACCAAACCTTCGTCGTCCATCGAAGACAAAGTAACACCCGCCATCAGACCCCGGAAACGTAGCGCGGACAGCGTCGACAATGTATCCACTGGTGGCGCGTCCAGCGATTACAGACCCAGCGGCTCCAAACGCGTCGAGGAACTCAGACGCACACACAAGCGACCCAGGAAACTGTCGGGACATATTTCGCAATTTGATTCAGATTACGAAGACAACAGCTTCTCGTACTTACCCGATACCGATTCCGATGAGCCCTTACTTAATAATAGCTTCAATTGTGATCAATGCCACAAACGTTTTCAATCCCAAAGAAGCCTCGCTGTCCACAAGAGGGTACACGAAAAAAAAGAAACTCTTGGCGAAAACGCCGTCGTTGATATACCACAAAAGATACAAGACGCGACCGACGTGGAAGATAAATTGAACTGCGACAAATGTGACAAGTCATTCAAGCTAAAAATTATGTTGAAACGTCACCAAGAAATGTGCGGGAAGGCCACAAGTCCCGTCAGGACTCTAAAGAAAGAGTTGCTCGTCTCTTTAGAACCAATCGACGGCATGAAGAACCGGAACATTGTGTGCGAAATGTGCTCGGCCAAGTTCAAGACTATTGAGAATTTGGCAAAGCATATGAAGGTGGTTCATGCTGCAGTCTTGAAAAAAGTAGATCCAGATAAACGGGAAAATGGAAAAGTGACAGTCCCATGCATGTACTGTAACAAGCAGTTCGAAGATTATTATGTTCACAGTGCGCATTTCAACAAGTGTCCGAAAAGGGACGACTCTGTGTCGTATGAGTGTCCCATTTGTAAGAAGGTGGTGTCAAGAAAGAACTCTTATTTCTTACATCTTAAGAACATGCATTTTGAGCCTCGGATGTCGCCGAAGAGTACAGTGGAGCCTGAGTCACAGCAGTGCCACGAGTGTAGGATGTGTTTCAAGAAGCTTCCCTCGCAAGAGTTGCTGATCACGCATCTGGCGGCGCACATGTCGAATATCGATGACAATGATGGCGGAGCCGACAACGAATCTAGAGCAAGCACCATAGACGACAGTGCGTCTGTCCAATCAGTACATAGCCAATCTCACTCTTCCACCGGTCAATTTAACTGTGCAACATGTGACAAAGAGTTTAAATACAGGAAAGCTCTCCAAACGCACGAGGCTAGGTGTCATTCAGAAGTACCTGTGCAAGTAAAGATAGAGCCCCCTGATAAGGCATCAACGAGTCTCTTGAGCGAGACGGCTGTATATCGGCAGACTGAGTCGGAATCTAGTCAAGAAGAGGACGACAACACGTGTGATATCTGTGAGAAACAGTTCTCGTACCGCCGGCTACTACTTCATCATAAGCGGACCAAACACAACATGAGCTCGGGACATAAGCGCGCTAAAATCTACCTCAAAGACTGCTCCGTGCGTTGCCTCATCTGCGACCTCGACATGAAGGTCGGCGCGATCAACGAACACAATCAGACGCATATCTCAAAGAACATGAAGCCTAGGAACCTGTACACCTGCGCTGAGTGCGAGGACACTTTCAAGAGCTGTTCTGCTCTCGCAAACCATATAAAGCTAATTCATCGACTAAAACAGAAACGGCCGAGTGTAGAGACTGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCTCTGGACTTTATCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCGAGAGCAAGCCGTTAGTAGATCTTAGCGGCTTCACCTGTCCCATCTGTAACAAGAAGATGCCGACACTTATATCTTTGAAGAGGCACGTCAACTGGCACTCCAGTGTAGGCAATCATATTGAGAAGAAGCATGAGTGTTCCGTCTGTAAGGAGTCATTCAAGTTCATGTGCCACTACAAGATCCACATGCGCGAGCACTACCGCGACACGAACCTCGACCCGCAGCACCTCACGTGCGCCATCTGCGGCCGGCGCAGCAAGCACCTCCGCGCCGCGCAGGCCCACATGACCTACCACAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCGAGAGAGTCTTCCAGTACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGCGTTATCAACACCATCGTAGGCGACGCCATGCCCAGTAACGCCGACAGAACCGTCTTCGACGGCACACACACCTGTCACCTATGCGGCAAGATTTGCGATTCAGAAAACTCCCTCAAATGTCATCTCTCATGGCATACCTCCAAAACTTTCCTGTTTGGCGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACGAACAAGCGAAGACTAGAACTTCACACGCGAGCTCACTTCGAAGACGATAATGGTCCCTACAAGTGCGCCATTTGCGGCAAAGGGTACACCGACGAGGGCTACTACCAAAGACATGTGAAAGGACACAATTTCGATCATCAGTCCCACAAAAAGAGGATCGAAAAAATCAGAAAGGATAAAGTTAAATGTCCAATATGTACGCGGTACTACCCTGACTTGGTGAAGCTGATCCGTCACTTGCGGCGCACGCACCCCGAGAGTAAGATGATCAAATCCGACCCCGACGCTCCGCCACCACTCTACTACTCCTGTAAGTTGTGCGCTAAAGTGTTTCTGGACGAGCGGAGACTGCAGTCCCACGAGGAAGCTCATTTAAGGAAGCCGGAGTTCTTTAAATGTAAGTTCTGTGGAAAGAAATACATTTCGCTGAAGAACCACCAGCTTCACATAAAGGGACACTTGGCGCAGAAGCACTACGACAACCCGCTGAAGTGCCCGCACTGCGACGAGAAGTTCGTGAAGGGCTACGCGCTGCACCACCACCTGCGCGACGCGCACGACGTGCTGGAGACGTGGATCGCCGAGCGCACGGAGCAGCCGCTGCACGGCCCGCTCAAGGACCTGCAGTGCTCCATCTGCATGAAGGTGCTCGCCAGCAAGGGCAACTACGAGCGGCACATCGACTACCACAACTCCTTGAGATGTAACTACTGCTTCGATTACTTCAGCTCTCTCAGGTTCTTAGAAGGACATTTAGCGTTCTCGTGCGAGAAGAAAAAGCTTATAGGCGATACAGAGGTTTACCCTAAGAAAGTGAAATGCAACATTTGTTACAAAGCCTTCCATGTTCAAGTGAAACTGGACTGCCACTTGCGCACGCAGCACGGCATCATAGTCGACAGGGAACGGAGAGCAGGCAAGCAAGAAATTGTATGCGATTATTGCTTTAGAGTTTTCGAAAACGAGGATGCCCTGAGTACTCACAAGATTTATCATCGCACGGTTGGCTACTACGGGTGTATTTACTGCAAAAAGAAGTTTGGCTCGCTGACCGTGTATCGAAAACACAAGAATCACCATATGGCGCAGCTCAATGTAGATAACCCGACGAAATGCGAACATTGTGACGAGACGTTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTACACGGAGATGACAAGGAATGGTTCACAGAGCCCAAGGAGTCCATCGAAGAGACTTGTCCCATCTGTAACAAACGATTTTACAACCTTCACAAGCATTTGACTTATCACGAACAAAACAAATGCAAGAAGTGCAGCGAATATTTCTATTCCCGAGCGGACTTCGATAGTCATCTCTGCGCTATTGAGAGCGATGACGAAGGCACGGGATACGTGGCCAACGGAGAAACGTTCCAGTACGAGGAGTGCAGATTCTGCTTCAAACCTATCACCAAGAAGAGCACCAAGCGGTTACACGACCAGATACACAAGGGCTCCGGCTCTATATCCTGTAGGTTCTGCACACTTAAATTTAAAACTATGGATGCTTTTAACATACACGCATTCTCTCATCGAAGTAGAAAATACAACAAGAAGCCGATAAAATGTCGGAAATGCGGCGAAAAGTTCGTTAAATACGGACCATTCATAAAGCATATGAAGTTAGTTCACAAATCTTTGAAGAAGGTTCACTACAGAGCAATTGTGAAGCCTGAGAAGTGTGTCGTTTGTGGAGACGACTTCCCGAATCTTCACAACCATTACCGCGCTCATCTGCTGAACCAGTGCCAGAGTTGTCTCAAATACTTTACTTCGTACAAAGTGATGTCTGCGCACGAGTGCGACAAGGAAGACTCGGACCCGTCGAAGGTGTTCACGAGTGACGCTAACTTGAACGAGCTGATAAACTCATATGTTCCTAAGGACGAGAAGGATGATGAGAAGTACTACGGCCACACGGACGACGAGGAAGAAGATGTTGAGCCACAGGTACTTGGCGAAGAAGAAGAAAGTCAGGAGAGTAAAGACATCCCGATGCTCCAGTCGCCGATTATATCAGATGTTCTGTCGCTGTTCAAAGTGGAAATGAATGGGATGGGTGATGTGGATGGCGTGGTGGATAACATGGAAGACGTGGTCAATATAATTGATGACGACGACTCGGTGGATGTCGATGAATCCGTTCCGCCAGTAATTGTCGTTATAGATGACGATTAG
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECARVKIYDGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDTSNLTKPSSSIEDKVTPAIRPRKRSADSVDNVSTGGASSDYRPSGSKRVEELRRTHKRPRKLSGHISQFDSDYEDNSFSYLPDTDSDEPLLNNSFNCDQCHKRFQSQRSLAVHKRVHEKKETLGENAVVDIPQKIQDATDVEDKLNCDKCDKSFKLKIMLKRHQEMCGKATSPVRTLKKELLVSLEPIDGMKNRNIVCEMCSAKFKTIENLAKHMKVVHAAVLKKVDPDKRENGKVTVPCMYCNKQFEDYYVHSAHFNKCPKRDDSVSYECPICKKVVSRKNSYFLHLKNMHFEPRMSPKSTVEPESQQCHECRMCFKKLPSQELLITHLAAHMSNIDDNDGGADNESRASTIDDSASVQSVHSQSHSSTGQFNCATCDKEFKYRKALQTHEARCHSEVPVQVKIEPPDKASTSLLSETAVYRQTESESSQEEDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLKQKRPSVETVNPSDFCEVVVAKAEPLDFIQSHNDFGEVPGESKPLVDLSGFTCPICNKKMPTLISLKRHVNWHSSVGNHIEKKHECSVCKESFKFMCHYKIHMREHYRDTNLDPQHLTCAICGRRSKHLRAAQAHMTYHKQTRFQNKDYQCSICERVFQYRKVYLSHMAIHYKKGDSVINTIVGDAMPSNADRTVFDGTHTCHLCGKICDSENSLKCHLSWHTSKTFLFGARHECTICKVKFTNKRRLELHTRAHFEDDNGPYKCAICGKGYTDEGYYQRHVKGHNFDHQSHKKRIEKIRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKNHQLHIKGHLAQKHYDNPLKCPHCDEKFVKGYALHHHLRDAHDVLETWIAERTEQPLHGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLIGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDRERRAGKQEIVCDYCFRVFENEDALSTHKIYHRTVGYYGCIYCKKKFGSLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHLTYHEQNKCKKCSEYFYSRADFDSHLCAIESDDEGTGYVANGETFQYEECRFCFKPITKKSTKRLHDQIHKGSGSISCRFCTLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKLVHKSLKKVHYRAIVKPEKCVVCGDDFPNLHNHYRAHLLNQCQSCLKYFTSYKVMSAHECDKEDSDPSKVFTSDANLNELINSYVPKDEKDDEKYYGHTDDEEEDVEPQVLGEEEESQESKDIPMLQSPIISDVLSLFKVEMNGMGDVDGVVDNMEDVVNIIDDDDSVDVDESVPPVIVVIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785388;
90% Identity: iTF_00425685;
80% Identity: -