Anig017867.1
Basic Information
- Insect
- Aporophyla nigra
- Gene Symbol
- -
- Assembly
- GCA_947507805.1
- Location
- OX382321.1:5932069-5939154[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.51 43 5.5 0.2 3 23 29 50 27 50 0.89 2 22 4 3.4e+02 2.6 1.1 3 17 71 87 70 88 0.90 3 22 0.00085 0.072 14.2 1.1 1 23 119 141 119 141 0.98 4 22 0.094 7.9 7.8 1.9 1 21 145 165 145 166 0.92 5 22 0.14 11 7.3 0.5 2 21 179 198 179 199 0.91 6 22 0.00018 0.015 16.3 1.4 1 23 206 229 206 229 0.95 7 22 0.45 38 5.6 0.1 1 11 236 246 236 249 0.91 8 22 0.053 4.5 8.6 0.6 2 23 277 299 276 299 0.91 9 22 0.017 1.4 10.1 0.5 2 23 369 390 368 390 0.96 10 22 7.5e-06 0.00063 20.7 1.5 2 20 395 413 392 415 0.88 11 22 9.1 7.7e+02 1.5 0.4 2 19 425 442 425 445 0.91 12 22 0.62 53 5.2 0.7 1 23 452 475 452 475 0.87 13 22 0.0032 0.27 12.4 0.3 2 23 508 530 507 530 0.96 14 22 0.15 13 7.1 0.1 3 23 557 578 555 578 0.94 15 22 0.039 3.3 9.0 1.1 2 23 601 622 600 622 0.96 16 22 1.2e-05 0.00099 20.1 7.1 1 23 626 649 626 649 0.96 17 22 1.7 1.5e+02 3.8 0.3 3 20 656 673 655 675 0.88 18 22 0.048 4 8.7 0.0 1 23 682 705 682 705 0.95 19 22 0.0066 0.56 11.4 0.4 1 23 712 735 712 735 0.96 20 22 3.8e-05 0.0032 18.4 2.8 1 23 740 762 740 762 0.97 21 22 2.2e-06 0.00019 22.3 0.9 1 20 768 787 768 790 0.94 22 22 0.0006 0.05 14.7 7.6 1 23 796 818 796 819 0.95
Sequence Information
- Coding Sequence
- ATGTTCATCGCGCGACAGAACGCCAAAACGATGATAGAGTATACTACAGCTTACCCCTTCAAGCTGCCAGAATCTTCCATGGTTTGCGTGTACTGCTGTGATAGCTTCCCAGACCCCGCGGACTTTAGGGAACATATGAATCTAGAACATCAGGACTTCAAAGTACGAATGGCGTTCGTTCATGTCGCCGAAGCATCTGTTAAAGTCGATTGCACTGACCTTAAATGCAGAGTCTGCTTTGATACTTTATCTAATTTACAACAAGCCGCAGATCATTTAGTCAAAAAACACAATAAAAATCTAAATCCAAATCATGACTTAGGCATGCACCCGTTTAAAATTTATAAGGATAAATATTCATGTGCGATATGTGCAGAGAAATTTTCGACGCTGGCGTTATTGAGTAAACACACGCACACACACTTTGTGCAATACACTTGTGATGCCTGTGGCAAGTCCTATGCGTCATTGACCTCTCTACACTGCCATCTTAGATACAACTGTGGCAACGAATCCGATAAAAATAACAAAAATAGATGCAGAAAATGTAGAAAAATATTCACCTCGGCAACGGAACGAATGGACCATTTGGAAACTTCGCTGCGATGTCGTCAGCACGTCTGTAATATCTGTGGAGAAAGGTTTACTACTTGGAATATGAAGCAGAATCATCTTAAAGAGACACATAACGTGCCCCAGAAGACCTATAACTGCCCAGAGTGTCACTTAGTTTTCAAATTAAATCCGATGCACATCGCAAAAAGGAACGCCCAGACCGTTTTACAATATATCACAGCTTATCCGTTTAGGCTCCCGGAGAGTTCAATCGTATGCGTTTACTGCTGCGAAAGCTTTGACGAACCTTCTAGCTTCAGGAAGCATATGGATGACGACCACGAAGTGTTCAACGCCAGGGTCGCATTTTCACACTTACACGAAGGATATATTAAGGCCGATTGCACAGATCTTCACTGCAGAATATGCCTTGAAACTTTCAATAACATCGAAGAGGGTGCCATTCACTTATACAAAGCCCATAAACAAAGTATCGACTTAAATCACGACATAGGCCTCCAGCCTTTTAATCTACAGAATGACAAATTATCCTGCGTCGTATGCCAAGAGAAATCGTCCAACATTCGAAGCTTAAGCCGACATATCCAAAAACACTTCTTCCAATGTACGTGCGACCTTTGTGGCAAATCGTTCGCATCTTCCACCTCTTTGCAAAAACATATGGAGTTCTCCTGCCCTTTTATACCGAAACAGAGGAGATGTAGGAAATGCAAAGTTGTTTTATACTCATCTGAAGATCAAAAGAAGCACTTTGAAGTGTCTAGACAGTGTCGACAGCACATATGCTCGGTCTGCGGCGACAGATTCAGTACATGGAAGATAAAACGCAGCCACATGGAGCAAGCACACGAAATGAACAAACCGTTGTCCATCGCGCGACGGAATGCAGAGATTATCGTCCTGCACGCCACGGTTTACCCCTTCCGTCTGCCGGAGACAGCCCTCATGTGCGTATATTGTGGGGACAGTTACAACGACGCCACACTGTTTCGACAGCATATGAAGAAAGAACATTTCTCCTACAAAGTCCGAACTGCTTTCGCTCATATTGCAAACGAGTCCTTCCTCAAAATCGACTGCACTGAAATGGCCTGCAGAATCTGTTTTGAATCCTTCGCTAAAATCGACGATATTGCACGACATTTAAACGAGAGACACGATGCGAAAATCGACTTTGACTTCCAATTAGGACTACATCCCTACAGATTTTTACAAGACAAACTCATGTGCGGGATTTGTGATCTTAACTTCCCCTGTTTGCGGCAGCTTAGTCGTCACATGTCGTCTCACTTTCTGAACTTCACGTGCAACACTTGCGATAAGTGTTACACGACCAACAGCTCCTTGCAACACCATATTCGATTCACGCACACTTCGGGTGATAAAATATGCAGAAAATGCAAACAGGCGTTCAATTCTTTAGCAGCTAAGAGAGAGCATACACTCAAATCTCCCGGGTGTTGGAAGTATCAGTGTCTTGTATGCCTAGAGCGGTTCATCACGTGGCCCGCCAGAGAACGACATCTAGTAATGGCTCACGGGCAATCCGGGAAGTCGTATCCTTGTTCCGAATGCAGTCTAAGCTTTACAGCTAGAAATGCGTATAATGCGCACTTTAATATGACCCATGCTGACGTCAGTTTCTCTTGCACGCACTGCGGTCGGAAATTCGCCTCCAAAAGATATTTGGAAGAGCACAAGTTAGTCCACACAGGCATAAAAACGTTTCAATGTAATGTGTGCTCTAAATCTTTTTCTAGAAAGAACAATCTTGTTCAGCACATGTGGATCCATAGTGACTGTAAGAGGTTTGAATGCAAGTCTTGTAAAAAGCGGTTCAATCAAAGACATAGCTACAAGGCGCATATGAAAGGACATCATCCTGAGATATCTGAAGATCAGTGGGTGATTTAG
- Protein Sequence
- MFIARQNAKTMIEYTTAYPFKLPESSMVCVYCCDSFPDPADFREHMNLEHQDFKVRMAFVHVAEASVKVDCTDLKCRVCFDTLSNLQQAADHLVKKHNKNLNPNHDLGMHPFKIYKDKYSCAICAEKFSTLALLSKHTHTHFVQYTCDACGKSYASLTSLHCHLRYNCGNESDKNNKNRCRKCRKIFTSATERMDHLETSLRCRQHVCNICGERFTTWNMKQNHLKETHNVPQKTYNCPECHLVFKLNPMHIAKRNAQTVLQYITAYPFRLPESSIVCVYCCESFDEPSSFRKHMDDDHEVFNARVAFSHLHEGYIKADCTDLHCRICLETFNNIEEGAIHLYKAHKQSIDLNHDIGLQPFNLQNDKLSCVVCQEKSSNIRSLSRHIQKHFFQCTCDLCGKSFASSTSLQKHMEFSCPFIPKQRRCRKCKVVLYSSEDQKKHFEVSRQCRQHICSVCGDRFSTWKIKRSHMEQAHEMNKPLSIARRNAEIIVLHATVYPFRLPETALMCVYCGDSYNDATLFRQHMKKEHFSYKVRTAFAHIANESFLKIDCTEMACRICFESFAKIDDIARHLNERHDAKIDFDFQLGLHPYRFLQDKLMCGICDLNFPCLRQLSRHMSSHFLNFTCNTCDKCYTTNSSLQHHIRFTHTSGDKICRKCKQAFNSLAAKREHTLKSPGCWKYQCLVCLERFITWPARERHLVMAHGQSGKSYPCSECSLSFTARNAYNAHFNMTHADVSFSCTHCGRKFASKRYLEEHKLVHTGIKTFQCNVCSKSFSRKNNLVQHMWIHSDCKRFECKSCKKRFNQRHSYKAHMKGHHPEISEDQWVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -